Evidence map›Paper›PMID 35526849›Full record

ReviewBiochemistry. Biokhimiia2022

Genomics of Ancient Pathogens: First Advances and Prospects.

Alexandra B Malyarchuk, Tatiana V Andreeva, Irina L Kuznetsova, Svetlana S Kunizheva, Maria S Protasova, Lev I Uralsky, Tatiana V Tyazhelova, Fedor E Gusev, Andrey D Manakhov, Evgeny I Rogaev

Open access · bronzeAbstract readHistorical ArticleReview
In one paragraph

Review in Biochemistry. Biokhimiia, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Alexandra B MalyarchukCenter for Genetics and Genetic Technologies, Faculty of Biology, Lomonosov Moscow State University, Moscow, 119234, Russia. a_malyarchuk98@mail.ru.
Tatiana V AndreevaCenter for Genetics and Genetic Technologies, Faculty of Biology, Lomonosov Moscow State University, Moscow, 119234, Russia.
Irina L KuznetsovaVavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, 119333, Russia.
Svetlana S KunizhevaVavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, 119333, Russia.
Maria S ProtasovaVavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, 119333, Russia.
Lev I UralskyVavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, 119333, Russia.
Tatiana V TyazhelovaVavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, 119333, Russia.
Fedor E GusevVavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, 119333, Russia.
Andrey D ManakhovVavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, 119333, Russia.
Evgeny I RogaevVavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, 119333, Russia. rogaev@vigg.ru.
Vavilov Institute of General Genetics · RULomonosov Moscow State University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Paleogenomics is one of the urgent and promising areas of interdisciplinary research in the today's world science. New genomic methods of ancient DNA (aDNA) analysis, such as next generation sequencing (NGS) technologies, make it possible not only to obtain detailed genetic information about historical and prehistoric human populations, but also to study individual microbial and viral pathogens and microbiomes from different ancient and historical objects. Studies of aDNA of pathogens by reconstructing their genomes have so far yielded complete sequences of the ancient pathogens that played significant role in the history of the world: Yersinia pestis (plague), Variola virus (smallpox), Vibrio cholerae (cholera), HBV (hepatitis B virus), as well as the equally important endemic human infectious agents: Mycobacterium tuberculosis (tuberculosis), Mycobacterium leprae (leprosy), and Treponema pallidum (syphilis). Genomic data from these pathogens complemented the information previously obtained by paleopathologists and allowed not only to identify pathogens from the past pandemics, but also to recognize the pathogen lineages that are now extinct, to refine chronology of the pathogen appearance in human populations, and to reconstruct evolutionary history of the pathogens that are still relevant to public health today. In this review, we describe state-of-the-art genomic research of the origins and evolution of many ancient pathogens and viruses and examine mechanisms of the emergence and spread of the ancient infections in the mankind history.

Indexed as

GenomicsYersinia pestisDNA, AncientHistory, AncientHumansMycobacterium lepraePaleontologyDNA, Ancientancient DNAcholerahuman populationsleprosypaleogenomicspaleopathologypathogenplaguesmallpoxsyphilistuberculosis

Identifiers

PMID35526849
PMCPMC8916790
OpenAlexW4221120024

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.