Evidence map›Paper›PMID 35526093›Full record

ArticleBiophysical journal2022

Bacterial chemotaxis to saccharides is governed by a trade-off between sensing and uptake.

Noele Norris, Uria Alcolombri, Johannes M Keegstra, Yutaka Yawata, Filippo Menolascina, Emilio Frazzoli, Naomi M Levine, Vicente I Fernandez, Roman Stocker

Abstract read
In one paragraph

Article in Biophysical journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Noele NorrisDepartment of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, Massachusetts; Institute of Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zürich, Zürich, Switzerland; Department of Biological Sciences, University of Southern California, Los Angeles, California. Electronic address: noelen@alum.mit.edu.
Uria AlcolombriInstitute of Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zürich, Zürich, Switzerland.
Johannes M KeegstraInstitute of Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zürich, Zürich, Switzerland.
Yutaka YawataFaculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan.
Filippo MenolascinaSchool of Engineering, Institute for Bioengineering, The University of Edinburgh, Edinburgh, UK.
Emilio FrazzoliDepartment of Mechanical and Process Engineering, Institute for Dynamic Systems and Control, ETH Zürich, Zürich, Switzerland.
Naomi M LevineDepartment of Biological Sciences, University of Southern California, Los Angeles, California.
Vicente I FernandezInstitute of Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zürich, Zürich, Switzerland.
Roman StockerInstitute of Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zürich, Zürich, Switzerland. Electronic address: romanstocker@ethz.ch.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To swim up gradients of nutrients, E. coli senses nutrient concentrations within its periplasm. For small nutrient molecules, periplasmic concentrations typically match extracellular concentrations. However, this is not necessarily the case for saccharides, such as maltose, which are transported into the periplasm via a specific porin. Previous observations have shown that, under various conditions, E. coli limits maltoporin abundance so that, for extracellular micromolar concentrations of maltose, there are predicted to be only nanomolar concentrations of free maltose in the periplasm. Thus, in the micromolar regime, the total uptake of maltose from the external environment into the cytoplasm is limited not by the abundance of cytoplasmic transport proteins but by the abundance of maltoporins. Here, we present results from experiments and modeling suggesting that this porin-limited transport enables E. coli to sense micromolar gradients of maltose despite having a high-affinity ABC transport system that is saturated at these micromolar levels. We used microfluidic assays to study chemotaxis of E. coli in various gradients of maltose and methyl-aspartate and leveraged our experimental observations to develop a mechanistic transport-and-sensing chemotaxis model. Incorporating this model into agent-based simulations, we discover a trade-off between uptake and sensing: although high-affinity transport enables higher uptake rates at low nutrient concentrations, it severely limits the range of dynamic sensing. We thus propose that E. coli may limit periplasmic uptake to increase its chemotactic sensitivity, enabling it to use maltose as an environmental cue.

Indexed as

Escherichia coli ProteinsPeriplasmic Binding ProteinsBacterial ProteinsChemotaxisEscherichia coliMaltoseMaltose-Binding ProteinsPorinsBacterial ProteinsEscherichia coli ProteinsMaltoseMaltose-Binding ProteinsPeriplasmic Binding ProteinsPorinsABC transportbacterial chemotaxismolecular-level modelpopulation-level motility assayporin-limited transport

Identifiers

PMID35526093
PMCPMC9247477

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.