Evidence map›Paper›PMID 35525109›Full record

ArticleBioorganic & medicinal chemistry2022

Short peptide pharmacophores developed from protein phosphatase-1 disrupting peptides (PDPs).

Miriam Fontanillo, Malgorzata Trebacz, Christopher D Reinkemeier, Daniela Avilés Huerta, Ulrike Uhrig, Peter Sehr, Maja Köhn

Open access · hybridAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. A protein phosphatase 1 specificProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  2. Article
  3. Shu Fu PaiAmerican journal of translational research · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Miriam FontanilloGenome Biology Unit, EMBL, Heidelberg, Germany.
Malgorzata TrebaczCentres for Biological Signalling Studies BIOSS and CIBSS, University of Freiburg, Freiburg, Germany; Faculty of Biology, University of Freiburg, Schänzlestrasse 18, 79104 Freiburg, Germany.
Christopher D ReinkemeierGenome Biology Unit, EMBL, Heidelberg, Germany.
Daniela Avilés HuertaGenome Biology Unit, EMBL, Heidelberg, Germany.
Ulrike UhrigChemical Biology Core Facility, EMBL, Heidelberg, Germany.
Peter SehrChemical Biology Core Facility, EMBL, Heidelberg, Germany.
Maja KöhnGenome Biology Unit, EMBL, Heidelberg, Germany; Centres for Biological Signalling Studies BIOSS and CIBSS, University of Freiburg, Freiburg, Germany; Faculty of Biology, University of Freiburg, Schänzlestrasse 18, 79104 Freiburg, Germany. Electronic address: maja.koehn@bioss.uni-freiburg.de.
European Molecular Biology Organization · DEEuropean Molecular Biology Laboratory · DEUniversity of Freiburg · DE

Funding

European Research Council 336567European Research Council 865119
6 · The paper itself

Abstract

PP1 is a major phosphoserine/threonine-specific phosphatase that is involved in diseases such as heart insufficiency and diabetes. PP1-disrupting peptides (PDPs) are selective modulators of PP1 activity that release its catalytic subunit, which then dephosphorylates nearby substrates. Recently, PDPs enabled the creation of phosphatase-recruiting chimeras, which are bifunctional molecules that guide PP1 to a kinase to dephosphorylate and inactivate it. However, PDPs are 23mer peptides, which is not optimal for their use in therapy due to potential stability and immunogenicity issues. Therefore, we present here the sequence optimization of the 23mer PDP to a 5mer peptide, involving several attempts considering structure-based virtual screening, high throughput screening and peptide sequence optimization. We provide here a strong pharmacophore as lead structure to enable PP1 targeting in therapy or its use in phosphatase-recruiting chimeras in the future.

Indexed as

PeptidesThreonineAmino Acid SequenceCatalytic DomainPhosphorylationProtein Phosphatase 1PeptidesProtein Phosphatase 1ThreonineHigh throughput screeningPeptide pharmacophorePP1-disrupting peptidesProtein phosphatase-1Rational peptide designStructure–activity relationship studyVirtual screening

Identifiers

PMID35525109
PMCPMC7613447
OpenAlexW4225326120

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.