Evidence map›Paper›PMID 35525068›Full record

ArticleComputers in biology and medicine2022

Automated quantitative assessment of amorphous calcifications: Towards improved malignancy risk stratification.

Kalyani Marathe, Chrysostomos Marasinou, Beibin Li, Noor Nakhaei, Bo Li, Joann G Elmore, Linda Shapiro, William Hsu

Open access · hybridAbstract read
In one paragraph

Article in Computers in biology and medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Kalyani MaratheDepartment of Electrical and Computer Engineering, University of Washington, Seattle, WA, USA.
Chrysostomos MarasinouMedical & Imaging Informatics, Department of Radiological Sciences, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA.
Beibin LiPaul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, WA, USA.
Noor NakhaeiMedical & Imaging Informatics, Department of Radiological Sciences, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA.
Bo LiDepartment of Radiological Sciences, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA.
Joann G ElmoreDepartment of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA.
Linda ShapiroDepartment of Electrical and Computer Engineering, University of Washington, Seattle, WA, USA; Paul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, WA, USA.
William HsuMedical & Imaging Informatics, Department of Radiological Sciences, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA. Electronic address: whsu@mednet.ucla.edu.
University of California, Los Angeles · USUniversity of Washington · US

Funding

Artificial Intelligence for Improved Breast Cancer Screening Accuracy: External Validation, Refinement, and Clinical TranslationR37CA240403 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI CHRISTOPH I LEE · 2020 to 2026
$3.8M
A Unified Machine Learning Package for Cancer DiagnosisU01CA231782 · NCI · UNIVERSITY OF WASHINGTON · PI ELMORE, JOANN G, SHAPIRO, LINDA · 2018 to 2020
$980k
NCI NIH HHS R37 CA240403NCI NIH HHS U01 CA231782
6 · The paper itself

Abstract

backgroundAmorphous calcifications noted on mammograms (i.e., small and indistinct calcifications that are difficult to characterize) are associated with high diagnostic uncertainty, often leading to biopsies. Yet, only 20% of biopsied amorphous calcifications are cancer. We present a quantitative approach for distinguishing between benign and actionable (high-risk and malignant) amorphous calcifications using a combination of local textures, global spatial relationships, and interpretable handcrafted expert features.

methodOur approach was trained and validated on a set of 168 2D full-field digital mammography exams (248 images) from 168 patients. Within these 248 images, we identified 276 image regions with segmented amorphous calcifications and a biopsy-confirmed diagnosis. A set of local (radiomic and region measurements) and global features (distribution and expert-defined) were extracted from each image. Local features were grouped using an unsupervised k-means clustering algorithm. All global features were concatenated with clustered local features and used to train a LightGBM classifier to distinguish benign from actionable cases.

resultsOn the held-out test set of 60 images, our approach achieved a sensitivity of 100%, specificity of 35%, and a positive predictive value of 38% when the decision threshold was set to 0.4. Given that all of the images in our test set resulted in a recommendation of a biopsy, the use of our algorithm would have identified 15 images (25%) that were benign, potentially reducing the number of breast biopsies.

conclusionsQuantitative analysis of full-field digital mammograms can extract subtle shape, texture, and distribution features that may help to distinguish between benign and actionable amorphous calcifications.

Indexed as

Breast DiseasesBreast NeoplasmsBreastFemaleHumansMammographyRadiographic Image Interpretation, Computer-AssistedRisk AssessmentMachine learningMammographyMicrocalcificationsRadiomics

Identifiers

PMID35525068
PMCPMC9839357
OpenAlexW4226269445

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.