Evidence map›Paper›PMID 35523781›Full record

ArticleNature communications2022

Ataluren binds to multiple protein synthesis apparatus sites and competitively inhibits release factor-dependent termination.

Shijie Huang, Arpan Bhattacharya, Mikel D Ghelfi, Hong Li, Clark Fritsch, David M Chenoweth, Yale E Goldman, Barry S Cooperman

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 44 citations in OpenAlex.

  1. RiboScreenBiomedicines · 2026
    Review
  2. Article
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  10. Review
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  13. Review
  14. A precision medicine approach to primary immunodeficiency disease: Ataluren strikes nonsense mutations once again.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
  15. Beyond the bench: Revitalizing ataluren development for rare genetic disorders.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
  16. Progress in skin gene therapy: From the inside and out.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
  17. Article
  18. Article
  19. Article
  20. Single-Molecule Studies of Cognate and Near-Cognate Elongation in anbioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Shijie Huang *Department of Chemistry, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Arpan Bhattacharya *Department of Chemistry, University of Pennsylvania, Philadelphia, PA, 19104, USA.ORCID http://orcid.org/0000-0002-0460-7876
Mikel D GhelfiDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Hong LiDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Clark FritschDepartment of Physiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.ORCID http://orcid.org/0000-0002-7507-8967
David M ChenowethDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Yale E GoldmanDepartment of Physiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Barry S CoopermanDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA, 19104, USA. cooprman@upenn.edu.ORCID http://orcid.org/0000-0001-6989-9788
University of Pennsylvania · USUniversities at Shady Grove · US

Funding

Supplemental Application linked to parent grant Structural Dynamics of Molecular Motors, the Cytoskeleton, and the RibosomeR35GM118139 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI YALE E GOLDMAN · 2016 to 2026
$8.3M
Mechanisms of Induced Nonsense Suppression and MisreadingR01GM127374 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BARRY S. COOPERMAN · 2018 to 2026
$2.3M
Targeting Nucleic Acid Junctions with Small MoleculesR01GM118510 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI CHENOWETH, DAVID MICHAEL · 2016 to 2020
$1.6M
Multi-Parameter Fluorescence Detection Single Molecule MicroscopyS10OD021573 · OD · UNIVERSITY OF PENNSYLVANIA · PI GOLDMAN, YALE E · 2017 to 2017
$484k
NIGMS NIH HHS R01 GM118510NIGMS NIH HHS R01 GM127374NIGMS NIH HHS R35 GM118139NIH HHS S10 OD021573
6 · The paper itself

Abstract

Genetic diseases are often caused by nonsense mutations, but only one TRID (translation readthrough inducing drug), ataluren, has been approved for clinical use. Ataluren inhibits release factor complex (RFC) termination activity, while not affecting productive binding of near-cognate ternary complex (TC, aa-tRNA.eEF1A.GTP). Here we use photoaffinity labeling to identify two sites of ataluren binding within rRNA, proximal to the decoding center (DC) and the peptidyl transfer center (PTC) of the ribosome, which are directly responsible for ataluren inhibition of termination activity. A third site, within the RFC, has as yet unclear functional consequences. Using single molecule and ensemble fluorescence assays we also demonstrate that termination proceeds via rapid RFC-dependent hydrolysis of peptidyl-tRNA followed by slow release of peptide and tRNA from the ribosome. Ataluren is an apparent competitive inhibitor of productive RFC binding, acting at or before the hydrolysis step. We propose that designing more potent TRIDs which retain ataluren's low toxicity should target areas of the RFC binding site proximal to the DC and PTC which do not overlap the TC binding site.

Indexed as

Protein BiosynthesisRibosomesOxadiazolesPeptide Termination FactorsRNA, TransferatalurenOxadiazolesPeptide Termination FactorsRNA, Transfer

Identifiers

PMID35523781
PMCPMC9076611
OpenAlexW4229082412

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.