Evidence map›Paper›PMID 35522715›Full record

ArticlePLoS genetics2022

Dnmt1a is essential for gene body methylation and the regulation of the zygotic genome in a wasp.

Deanna Arsala, Xin Wu, Soojin V Yi, Jeremy A Lynch

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

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  11. Neuromodulators and neuroepigenetics of social behavior in ants.Annals of the New York Academy of Sciences · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Deanna ArsalaDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, Illinois, United States of America.ORCID 0000-0001-8950-9572
Xin WuSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia, United States of America.ORCID 0000-0001-5161-3710
Soojin V YiSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia, United States of America.ORCID 0000-0003-1497-1871
Jeremy A LynchDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, Illinois, United States of America.ORCID 0000-0001-7625-657X
Georgia Institute of Technology · USUniversity of Illinois Chicago · US

Funding

Novel insights from a divergent form of germ plasmR01GM129153 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI ARKOV, ALEXEY, LYNCH, JEREMY · 2019 to 2023
$1.7M
Discovering the basis of the essential function of DNMT1 in wasp embryogenesisR03HD087476 · NICHD · UNIVERSITY OF ILLINOIS AT CHICAGO · PI LYNCH, JEREMY · 2016 to 2017
$157k
NICHD NIH HHS R03 HD087476NIGMS NIH HHS R01 GM129153
6 · The paper itself

Abstract

Gene body methylation (GBM) is an ancestral mode of DNA methylation whose role in development has been obscured by the more prominent roles of promoter and CpG island methylation. The wasp Nasonia vitripennis has little promoter and CpG island methylation, yet retains strong GBM, making it an excellent model for elucidating the roles of GBM. Here we show that N. vitripennis DNA methyltransferase 1a (Nv-Dnmt1a) knockdown leads to failures in cellularization and gastrulation of the embryo. Both of these disrupted events are hallmarks of the maternal-zygotic transition (MZT) in insects. Analysis of the embryonic transcriptome and methylome revealed strong reduction of GBM and widespread disruption of gene expression during embryogenesis after Nv-Dnmt1a knockdown. Strikingly, there was a strong correlation between loss of GBM and reduced gene expression in thousands of methylated loci, consistent with the hypothesis that GBM directly facilitates high levels of transcription. We propose that lower expression levels of methylated genes due to reduced GBM is the crucial direct effect of Nv-Dnmt1 knockdown. Subsequently, the disruption of methylated genes leads to downstream dysregulation of the MZT, culminating in developmental failure at gastrulation.

Indexed as

WaspsAnimalsCpG IslandsDNA MethylationGenomeZygote

Identifiers

PMID35522715
PMCPMC9075658
OpenAlexW4229025784

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.