Evidence map›Paper›PMID 35522154›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2022

Data-Rich Spatial Profiling of Cancer Tissue: Astronomy Informs Pathology.

Alexander S Szalay, Janis M Taube

Abstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Rapidly Evolving Pre- and Post-surgical Systemic Treatment of Melanoma.American journal of clinical dermatology · 2024
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Alexander S SzalayDepartment of Physics and Astronomy, Krieger School of Arts and Sciences, Johns Hopkins University, Baltimore, Maryland.ORCID 0000-0002-4108-3282
Janis M TaubeThe Mark Foundation Center for Advanced Genomics and Imaging, Johns Hopkins University, Baltimore, Maryland.ORCID 0000-0002-8273-4395

Funding

Translational Research Central ServicesP30CA006973 · NCI · JOHNS HOPKINS UNIVERSITY · PI WILLIAM George NELSON · 1985 to 2026
$208.6M
PD-1/PD-L1 modulation in cancer therapyR01CA142779 · NCI · JOHNS HOPKINS UNIVERSITY · PI PARDOLL, DREW M., TAUBE, JANIS M · 2010 to 2025
$8.2M
NCI NIH HHS P30 CA006973NCI NIH HHS R01 CA142779
6 · The paper itself

Abstract

Astronomy was among the first disciplines to embrace Big Data and use it to characterize spatial relationships between stars and galaxies. Today, medicine, in particular pathology, has similar needs with regard to characterizing the spatial relationships between cells, with an emphasis on understanding the organization of the tumor microenvironment. In this article, we chronicle the emergence of data-intensive science through the development of the Sloan Digital Sky Survey and describe how analysis patterns and approaches similarly apply to multiplex immunofluorescence (mIF) pathology image exploration. The lessons learned from astronomy are detailed, and the new AstroPath platform that capitalizes on these learnings is described. AstroPath is being used to generate and display tumor-immune maps that can be used for mIF immuno-oncology biomarker development. The development of AstroPath as an open resource for visualizing and analyzing large-scale spatially resolved mIF datasets is underway, akin to how publicly available maps of the sky have been used by astronomers and citizen scientists alike. Associated technical, academic, and funding considerations, as well as extended future development for inclusion of spatial transcriptomics and application of artificial intelligence, are also addressed.

Indexed as

AstronomyNeoplasmsArtificial IntelligenceFluorescent Antibody TechniqueHumansTumor Microenvironment

Identifiers

PMID35522154
PMCPMC9378428

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.