Evidence map›Paper›PMID 35517283›Full record

ArticleRSC advances2019

Smartphone-based kanamycin sensing with ratiometric FRET.

Saurabh Umrao, Anusha S, Vasundhara Jain, Banani Chakraborty, Rahul Roy

Open access · goldAbstract read
In one paragraph

Article in RSC advances, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Review
  3. Gold/DNA-CuMolecules (Basel, Switzerland) · 2024
    Article
  4. Review
  5. The quantum dotChemical science · 2022
    Article
  6. Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Saurabh UmraoDepartment of Chemical Engineering, Indian Institute of Science Bangalore 560012 India rahulroy@iisc.ac.in +91-80-2360-8121 +91-80-2293-3115 +91-80-2293-3118.
Anusha SDepartment of Chemical Engineering, Indian Institute of Science Bangalore 560012 India rahulroy@iisc.ac.in +91-80-2360-8121 +91-80-2293-3115 +91-80-2293-3118.
Vasundhara JainDepartment of Chemical Engineering, Indian Institute of Science Bangalore 560012 India rahulroy@iisc.ac.in +91-80-2360-8121 +91-80-2293-3115 +91-80-2293-3118.
Banani ChakrabortyDepartment of Chemical Engineering, Indian Institute of Science Bangalore 560012 India rahulroy@iisc.ac.in +91-80-2360-8121 +91-80-2293-3115 +91-80-2293-3118.
Rahul RoyDepartment of Chemical Engineering, Indian Institute of Science Bangalore 560012 India rahulroy@iisc.ac.in +91-80-2360-8121 +91-80-2293-3115 +91-80-2293-3118.ORCID https://orcid.org/0000-0003-3329-8803
Indian Institute of Science Bangalore · INInstitute of Molecular Biology and Biophysics · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Smartphone-based fluorescence detection is a promising avenue for biosensing that can aid on-site analysis. However, quantitative detection with fluorescence in the field has been limited due to challenges with robust excitation and calibration requirements. Here, we show that ratiometric analysis with Förster resonance energy transfer (FRET) between dye pairs on DNA aptamers can enable rapid and sensitive kanamycin detection. Since our detection scheme relies on ligand binding-induced changes in the aptamer tertiary structure, it is limited only by the kinetics of ligand binding to the aptamer. Our FRET-based kanamycin binding aptamer (KBA) sensor displays two linear ranges of 0.05-5 nM (detection limit of 0.18 nM) and 50-900 nM of kanamycin. The aptamer displays high specificity even in the presence of the 'natural' background from milk. By immobilizing the aptamer in the flow cell, our KBA sensor design is also suitable for repeated kanamycin detection. Finally, we show that the ratiometric FRET-based analysis can be implemented on a cheap custom-built smartphone setup. This smartphone-based FRET aptamer scheme detects kanamycin in a linear range of 50-500 nM with a limit of detection (LOD) of 28 nM.

Identifiers

PMID35517283
PMCPMC9060919
OpenAlexW2915873420

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.