Evidence map›Paper›PMID 35510715›Full record

ArticlePlant signaling & behavior2022

A conserved oxalyl-coenzyme A decarboxylase in oxalate catabolism.

Ninghui Cheng, Vincent Paris, Xiaolan Rao, Xiaoqiang Wang, Paul A Nakata

Open access · goldAbstract read
In one paragraph

Article in Plant signaling & behavior, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Disruption of theInternational journal of molecular sciences · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Ninghui ChengUSDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, Texas, United States.ORCID 0000-0002-0765-5507
Vincent ParisDepartment of Biological Sciences, BioDiscovery Institute, University of North Texas, Texas, United States.ORCID 0000-0002-0361-6965
Xiaolan RaoState Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, P. R. China.ORCID 0000-0001-7939-8362
Xiaoqiang WangDepartment of Biological Sciences, BioDiscovery Institute, University of North Texas, Texas, United States.ORCID 0000-0001-9135-1663
Paul A NakataUSDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, Texas, United States.ORCID 0000-0002-6331-9700
Children's Nutrition Research Center at Baylor College of Medicine · USUniversity of North Texas · USHubei University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ability to biosynthesize oxalic acid can provide beneficial functions to plants; however, uncontrolled or prolonged exposure to this strong organic acid results in multiple physiological problems. Such problems include a disruption of membrane integrity, mitochondrial function, metal chelation, and free radical formation. Recent work suggests that a CoA-dependent pathway of oxalate catabolism plays a critical role in regulating tissue oxalate concentrations in plants. Although this CoA-dependent pathway of oxalate catabolism is important, large gaps in our knowledge of the enzymes catalyzing each step remain. Evidence that an oxalyl-CoA decarboxylase (OXC) catalyzes the second step in this pathway, accelerating the conversion of oxalyl-CoA to formyl-CoA, has been reported. Induction studies revealed that OXC gene expression was upregulated in response to an exogenous oxalate supply. Phylogenetic analysis indicates that OXCs are conserved across plant species. Evolutionarily the plant OXCs can be separated into dicot and monocot classes. Multiple sequence alignments and molecular modeling suggest that OXCs have similar functionality with three conserved domains, the N-terminal PYR domain, the middle R domain, and the C-terminal PP domain. Further study of this CoA-dependent pathway of oxalate degradation would benefit efforts to develop new strategies to improve the nutrition quality of crops.

Indexed as

Carboxy-LyasesAcyl Coenzyme AModels, MolecularOxalatesOxalic AcidPhylogenyAcyl Coenzyme ACarboxy-LyasesOxalatesOxalic Acidoxalyl-coenzyme AArabidopsiscatabolismCoenzyme Adecarboxylaseoxalate

Identifiers

PMID35510715
PMCPMC9090294
OpenAlexW4228997267

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.