Evidence map›Paper›PMID 35510126›Full record

ArticleFrontiers in surgery2022

Identification of Common Hub Genes in Human Dermal Fibroblasts Stimulated by Mechanical Stretch at Both the Early and Late Stages.

Chen Dong, Wei Liu, Yu Zhang, Yajuan Song, Jing Du, Zhaosong Huang, Tong Wang, Zhou Yu, Xianjie Ma

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Frontiers in surgery, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Chen DongDepartment of Plastic Surgery, Xijing Hospital, Fourth Military Medical University, Xi'an, China.
Wei LiuDepartment of Plastic Surgery, Xijing Hospital, Fourth Military Medical University, Xi'an, China.
Yu ZhangDepartment of Plastic Surgery, Xijing Hospital, Fourth Military Medical University, Xi'an, China.
Yajuan SongDepartment of Plastic Surgery, Xijing Hospital, Fourth Military Medical University, Xi'an, China.
Jing DuDepartment of Plastic Surgery, Xijing Hospital, Fourth Military Medical University, Xi'an, China.
Zhaosong HuangDepartment of Plastic Surgery, Xijing Hospital, Fourth Military Medical University, Xi'an, China.
Tong WangDepartment of Plastic Surgery, Xijing Hospital, Fourth Military Medical University, Xi'an, China.
Zhou YuDepartment of Plastic Surgery, Xijing Hospital, Fourth Military Medical University, Xi'an, China.
Xianjie MaDepartment of Plastic Surgery, Xijing Hospital, Fourth Military Medical University, Xi'an, China.
Air Force Medical University · CNXijing Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Mechanical stretch is vital for soft tissue regeneration and development and is utilized by plastic surgeons for tissue expansion. Identifying the common hub genes in human dermal fibroblasts (HDFs) stimulated by mechanical stretch at different stages will help elucidate the mechanisms involved and improve the efficiency of tissue expansion. Methods: A gene expression dataset (GSE58389) was downloaded from the Gene Expression Omnibus database. Differentially expressed genes (DEGs) in HDFs between cyclic mechanical stretching and static samples were identified at 5 and 24 h. Common DEGs overlapped in both the 5 h and 24 h groups. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed to determine the functions of the DEGs. Protein-protein interaction networks were constructed using the STRING database. The top 10 hub genes were selected using the plug-in Cytohubba within Cytoscape. The regulatory network of hub genes was predicted using NetworkAnalyst. Results: A total of 669 and 249 DEGs were identified at the early (5 h) and late stages (24 h), respectively. Of these, 152 were present at both stages and were designated as common DEGs. The top enriched GO terms were "regulation of autophagy" at the early stage, and "sterol biosynthetic processes" at the late stage. The top KEGG terms were "pyrimidine metabolism" and "synaptic vesicle cycle" at the early and late stages, respectively. Seven common DEGs [DEAD-box helicase 17 ( Conclusion: At the early stage, there were clear changes in gene expression related to DNA and chromatin alterations; at late stages, gene expression associated with cholesterol metabolism was suppressed. Common DEGs related to skin development, transcriptional regulation, and cytoskeleton rearrangement identified in both stages were found to be potential targets for promoting HDF growth and alignment under mechanical stretch.

Indexed as

bioinformaticsdermisfibroblastsgenesmechanical stretchtissue expansion

Identifiers

PMID35510126
PMCPMC9058084
OpenAlexW4224090923

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.