Evidence map›Paper›PMID 35509940›Full record

ArticleHardwareX2022

A low-cost 3D-printable differential scanning fluorometer for protein and RNA melting experiments.

Fabian Barthels, Stefan J Hammerschmidt, Tim R Fischer, Collin Zimmer, Elisabeth Kallert, Mark Helm, Christian Kersten, Tanja Schirmeister

Abstract read
In one paragraph

Article in HardwareX, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Fabian BarthelsInstitute for Pharmaceutical and Biomedical Sciences, Johannes Gutenberg-University, Staudinger Weg 5, 55128 Mainz, Germany.
Stefan J HammerschmidtInstitute for Pharmaceutical and Biomedical Sciences, Johannes Gutenberg-University, Staudinger Weg 5, 55128 Mainz, Germany.
Tim R FischerInstitute for Pharmaceutical and Biomedical Sciences, Johannes Gutenberg-University, Staudinger Weg 5, 55128 Mainz, Germany.
Collin ZimmerInstitute for Pharmaceutical and Biomedical Sciences, Johannes Gutenberg-University, Staudinger Weg 5, 55128 Mainz, Germany.
Elisabeth KallertInstitute for Pharmaceutical and Biomedical Sciences, Johannes Gutenberg-University, Staudinger Weg 5, 55128 Mainz, Germany.
Mark HelmInstitute for Pharmaceutical and Biomedical Sciences, Johannes Gutenberg-University, Staudinger Weg 5, 55128 Mainz, Germany.
Christian KerstenInstitute for Pharmaceutical and Biomedical Sciences, Johannes Gutenberg-University, Staudinger Weg 5, 55128 Mainz, Germany.
Tanja SchirmeisterInstitute for Pharmaceutical and Biomedical Sciences, Johannes Gutenberg-University, Staudinger Weg 5, 55128 Mainz, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Differential scanning fluorimetry (DSF) is a widely used biophysical technique with applications to drug discovery and protein biochemistry. DSF experiments are commonly performed in commercial real-time polymerase chain reaction (qPCR) thermal cyclers or nanoDSF instruments. Here, we report the construction, validation, and example applications of an open-source DSF system for 176 €, which, in addition to protein-DSF experiments, also proved to be a versatile biophysical instrument for less conventional RNA-DSF experiments. Using 3D-printed parts made of polyoxymethylene, we were able to fabricate a thermostable machine chassis for protein-melting experiments. The combination of blue high-power LEDs as the light source and stage light foil as filter components was proven to be a reliable and affordable alternative to conventional optics equipment for the detection of SYPRO Orange or Sybr Gold fluorescence. The ESP32 microcontroller is the core piece of this openDSF instrument, while the in-built I

Indexed as

Biophysical chemistryDifferential scanning fluorimetryESP32Protein melting pointThermal shift assay

Identifiers

PMID35509940
PMCPMC9058602

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.