Evidence map›Paper›PMID 35509176›Full record

ArticleJournal of medical virology2022

Two conserved amino acids differentiate the biology of high-risk and low-risk HPV E5 proteins.

Sawali R Sudarshan, Richard Schlegel, Xuefeng Liu

Open access · hybridAbstract read
In one paragraph

Article in Journal of medical virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Pooled it
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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sawali R SudarshanDepartment of Pathology, Center for Cell Reprogramming, Georgetown University Medical School, Washington, District of Columbia, USA.
Richard SchlegelDepartment of Pathology, Center for Cell Reprogramming, Georgetown University Medical School, Washington, District of Columbia, USA.
Xuefeng LiuDepartment of Pathology, Center for Cell Reprogramming, Georgetown University Medical School, Washington, District of Columbia, USA.ORCID 0000-0002-9922-9627
Georgetown University · US

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Jennifer A. Woyach · 1985 to 2026
$132.3M
Developing Functional Human Cell Models to Study Initiation and Progression of Prostate Cancer between AA and EA menR01CA276474 · NCI · OHIO STATE UNIVERSITY · PI Xuefeng Liu · 2023 to 2026
$2.1M
Conditionally Reprogrammed Cell Model for Castration-Resistant Prostate Cancer (CRPC)R01CA222148 · NCI · OHIO STATE UNIVERSITY · PI LIU, XUEFENG · 2019 to 2022
$1.9M
Validating Urine Derived Cancer Cells (UDCC) -- Non-Invasive and Living Liquid Biopsies -- in Bladder Cancer ClinicsR33CA258016 · NCI · OHIO STATE UNIVERSITY · PI LIU, XUEFENG · 2021 to 2023
$1.2M
Conditionally reprogrammed cells as a novel tool for biobankingR33CA177466 · NCI · GEORGETOWN UNIVERSITY · PI SCHLEGEL, RICHARD, WELLSTEIN, ANTON · 2013 to 2015
$1.2M
NON-CANONICAL FUNCTIONS OF HTERT IN CELL IMMORTALIZATION BY HPVR21CA180524 · NCI · GEORGETOWN UNIVERSITY · PI LIU, XUEFENG · 2013 to 2014
$366k
NCI NIH HHS P30 CA016058NCI NIH HHS R01 CA222148NCI NIH HHS R01 CA276474NCI NIH HHS R21 CA180524NCI NIH HHS R33 CA177466NCI NIH HHS R33 CA258016
6 · The paper itself

Abstract

The high-risk alpha human papillomaviruses (HPVs) are responsible for 99% of cervical cancers. While the biological functions of the HPV E6 and E7 oncoproteins are well-characterized, the function of E5 has remained elusive. Here, we examined gene expression changes induced by E5 proteins from high-risk HPV-16 and low-risk HPV-6b in multiple pools of primary human keratinocytes. Surprisingly, microarray analysis revealed that over 700 genes were significantly regulated by HPV-6b E5, while only 25 genes were consistently and significantly regulated by HPV-16 E5 in three biological replicates. However, we observed that more than thousand genes were altered in individual sample compared with vector. The gene expression profile induced by 16E5 in primary genital keratinocytes was very different from what has been previously published using immortalized HaCaT cells. Genes altered by HPV-16 E5 were unaffected by HPV-6b E5. Our data demonstrate that E5 proteins from the high- and low-risk HPVs have different functions in the HPV-host cell. Interestingly, conversion of two amino acids in HPV-16 E5 to the low-risk HPV-6b sequence eliminated the induction of high-risk related cellular genes.

Indexed as

Oncogene Proteins, ViralPapillomavirus InfectionsViroporin ProteinsAmino AcidsFemaleHuman papillomavirus 16HumansAmino Acidsoncogene protein E5, Human papillomavirus type 16Oncogene Proteins, ViralViroporin Proteinscellular effectgene expressionhuman papillomavirusoncogenesisoncoproteinsvirus classification

Identifiers

PMID35509176
PMCPMC9283228
OpenAlexW4229043434

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.