Evidence map›Paper›PMID 35508977›Full record

ArticleBMC infectious diseases2022

CRISPR-Cas12a combination to alleviate the false-positive in loop-mediated isothermal amplification-based diagnosis of Neisseria meningitidis.

Ngo Tat Trung, Le Huu Phuc Son, Trinh Xuan Hien, Dao Thanh Quyen, Mai Hong Bang, Le Huu Song

Abstract read
In one paragraph

Article in BMC infectious diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. An isothermal CRISPR- based lateral flow assay for detection of Neisseria meningitidis.Annals of clinical microbiology and antimicrobials · 2024
    Article
  9. Review
  10. Review
  11. Article
  12. CRISPR-Cas-Integrated LAMP.Biosensors · 2022
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ngo Tat Trung *Centre for Genetics Consultation and Cancer Screening (CGC), Hanoi, Vietnam. tatrungngo@gmail.com.
Le Huu Phuc Son *Centre for Genetics Consultation and Cancer Screening (CGC), Hanoi, Vietnam.
Trinh Xuan Hien *Centre for Genetics Consultation and Cancer Screening (CGC), Hanoi, Vietnam.
Dao Thanh QuyenVietnamese-German Center for Medical Research (VG-CARE), Hanoi, Vietnam.
Mai Hong BangVietnamese-German Center for Medical Research (VG-CARE), Hanoi, Vietnam.
Le Huu Song *Vietnamese-German Center for Medical Research (VG-CARE), Hanoi, Vietnam. lehuusong@108-icid.com.

Funding

The Vietnamese Ministry of National Defence 364/2020/HD-NCKHCNVietnam National Foundation for Science and Technology Development (NAFOSTED) 108.06-2017.21
6 · The paper itself

Abstract

backgroundLoop isothermal amplification (LAMP) has recently been proposed as a point-of-care diagnostic tool to detect acute infectious pathogens; however, this technique embeds risk of generating false-positive results. Whereas, with abilities to accurately recognize specific sequence, the CRISPR/Cas12a can forms complexes with cognate RNA sensors and cleave pathogen's DNA targets complimerntary to its cognate RNA, afterward acquiring the collateral activity to unbiasedly cut nearby off-target fragments. Therefore, if relevant fluorescent-quencher-nucleic probes are present in the reaction, the non-specific cleavage of probes releases fluorescences and establish diagnostic read-outs.

methodsThe MetA gene of N. meningitidis was selected as target to optimize the LAMP reaction, whereas pseudo-dilution series of N. meningitidis gemonics DNA was used to establish the detection limit of LAMP/Cas12a combination assay. The diagnostic performance of established LAMP/Cas12a combination assay was validated in comparation with standard real-time PCR on 51 CSF samples (14 N. meningitidis confirmed patients and 37 control subjects).

resultsIn relevant biochemical conditions, CRISPR-Cas12a and LAMP can work synchronously to accurately identify genetics materials of Nesseria menitigistis at the level 40 copies/reaction less than 2 h.

conclusionsIn properly optimized conditions, the CRISPR-Cas12a system helps to alleviate false positive result hence enhancing the specificity of the LAMP assays.

Indexed as

CRISPR-Cas SystemsNeisseria meningitidisDNAHumansMolecular Diagnostic TechniquesNucleic Acid Amplification TechniquesRNADNARNACas12aCRISPRLAMPNesseria menitigistisPCR

Identifiers

PMID35508977
PMCPMC9066958

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.