Evidence map›Paper›PMID 35508495›Full record

ArticleNPJ breast cancer2022

Lipid exposure activates gene expression changes associated with estrogen receptor negative breast cancer.

Shivangi Yadav, Ranya Virk, Carolina H Chung, Mariana Bustamante Eduardo, David VanDerway, Duojiao Chen, Kirsten Burdett, Hongyu Gao, Zexian Zeng, Manish Ranjan and 7 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in NPJ breast cancer, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Targeting Lipid Metabolism in Cancer Stem Cells for Anticancer Treatment.International journal of molecular sciences · 2024
    Review
  4. Review
  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 1 country.

Shivangi YadavDepartment of Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA.
Ranya VirkDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, 60208-2850, USA.
Carolina H ChungDepartment of Biomedical Engineering, University of Michigan, Ann Arbor, MI, 48109, USA.ORCID http://orcid.org/0000-0003-2490-1842
Mariana Bustamante EduardoDepartment of Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA.ORCID http://orcid.org/0000-0003-3785-0714
David VanDerwayDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, 60208-2850, USA.
Duojiao ChenCenter of for Medical Genomics, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Kirsten BurdettDepartment of Preventive Medicine, Northwestern University, Chicago, IL, 60611, USA.
Hongyu GaoCenter of for Medical Genomics, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Zexian ZengDepartment of Data Sciences, Dana Farber Cancer Institute, Harvard T.H. Chan School of Public Health, Boston, MA, 02215, USA.
Manish RanjanDepartment of Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA.ORCID http://orcid.org/0000-0003-3242-4513
Gannon CottoneDepartment of Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA.
Xiaoling XueiCenter of for Medical Genomics, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.ORCID http://orcid.org/0000-0002-4143-2024
Sriram ChandrasekaranDepartment of Biomedical Engineering, University of Michigan, Ann Arbor, MI, 48109, USA.ORCID http://orcid.org/0000-0002-8405-5708
Vadim BackmanDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, 60208-2850, USA.
Robert ChattertonDepartment of Obstetrics and Gynecology, Northwestern University Feinberg School of Medicine, Chicago, IL, 60611, USA.
Seema Ahsan KhanDepartment of Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA. s-khan2@northwestern.edu.ORCID http://orcid.org/0000-0002-6307-2023
Susan E ClareDepartment of Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA. susan.clare@northwestern.edu.ORCID http://orcid.org/0000-0002-9499-0855
Northwestern University · USIndiana University School of MedicineUniversity of Michigan · USDana-Farber Cancer Institute · US

Funding

Reducing Cancer Transcriptional Heterogeneity through Regulation of Chromatin StructureR01CA228272 · NCI · NORTHWESTERN UNIVERSITY · PI BACKMAN, VADIM, ROY, HEMANT K. · 2018 to 2022
$3.2M
Multiplexed UPLC-MS/MS System for Advanced Target MetabolomicsS10OD021562 · OD · UNIVERSITY OF WASHINGTON · PI RAFTERY, DANIEL · 2016 to 2016
$596k
NCI NIH HHS R01 CA228272NIH HHS S10 OD021562
6 · The paper itself

Abstract

Improved understanding of local breast biology that favors the development of estrogen receptor negative (ER-) breast cancer (BC) would foster better prevention strategies. We have previously shown that overexpression of specific lipid metabolism genes is associated with the development of ER- BC. We now report results of exposure of MCF-10A and MCF-12A cells, and mammary organoids to representative medium- and long-chain polyunsaturated fatty acids. This exposure caused a dynamic and profound change in gene expression, accompanied by changes in chromatin packing density, chromatin accessibility, and histone posttranslational modifications (PTMs). We identified 38 metabolic reactions that showed significantly increased activity, including reactions related to one-carbon metabolism. Among these reactions are those that produce S-adenosyl-L-methionine for histone PTMs. Utilizing both an in-vitro model and samples from women at high risk for ER- BC, we show that lipid exposure engenders gene expression, signaling pathway activation, and histone marks associated with the development of ER- BC.

Identifiers

PMID35508495
PMCPMC9068822
OpenAlexW4225396548

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.