Evidence map›Paper›PMID 35508460›Full record

ArticleNature communications2022

Identification of DAXX as a restriction factor of SARS-CoV-2 through a CRISPR/Cas9 screen.

Alice Mac Kain, Ghizlane Maarifi, Sophie-Marie Aicher, Nathalie Arhel, Artem Baidaliuk, Sandie Munier, Flora Donati, Thomas Vallet, Quang Dinh Tran, Alexandra Hardy and 15 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
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  4. Host Responses to SARS-CoV-2 with an Emphasis on Cytokines.International journal of molecular sciences · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 5 institutions in 3 countries.

Alice Mac Kain *Institut Pasteur, Université de Paris Cité, CNRS UMR 3569, Viral populations and pathogenesis Unit, F-75015, Paris, France.ORCID 0000-0002-5218-6690
Ghizlane Maarifi *Institut de Recherche en Infectiologie de Montpellier (IRIM), , Université de Montpellier, CNRS, 34090, Montpellier, France.
Sophie-Marie AicherInstitut Pasteur, Université de Paris Cité, CNRS UMR 3569, Virus sensing and signaling Unit, F-75015, Paris, France.
Nathalie ArhelInstitut de Recherche en Infectiologie de Montpellier (IRIM), , Université de Montpellier, CNRS, 34090, Montpellier, France.ORCID 0000-0001-5309-1725
Artem BaidaliukInstitut Pasteur, G5 Evolutionary genomics of RNA viruses, F-75015, Paris, France.ORCID 0000-0002-8351-1142
Sandie MunierInstitut Pasteur, Université de Paris Cité, CNRS UMR 3569, Molecular Genetics of RNA Viruses Unit, F-75015, Paris, France.
Flora DonatiInstitut Pasteur, Université de Paris Cité, CNRS UMR 3569, Molecular Genetics of RNA Viruses Unit, F-75015, Paris, France.ORCID 0000-0003-2862-9751
Thomas ValletInstitut Pasteur, Université de Paris Cité, CNRS UMR 3569, Viral populations and pathogenesis Unit, F-75015, Paris, France.ORCID 0000-0001-7775-7448
Quang Dinh TranInstitut Pasteur, Université de Paris Cité, CNRS UMR 3569, Viral populations and pathogenesis Unit, F-75015, Paris, France.ORCID 0000-0002-9263-0733
Alexandra HardyInstitut Pasteur, Université de Paris Cité, CNRS UMR 3569, Viral populations and pathogenesis Unit, F-75015, Paris, France.ORCID 0000-0002-3027-8308
Maxime ChazalInstitut Pasteur, Université de Paris Cité, CNRS UMR 3569, Virus sensing and signaling Unit, F-75015, Paris, France.ORCID 0000-0002-3144-5032
Françoise PorrotInstitut Pasteur, Université de Paris Cité, CNRS UMR 3569, Virus and Immunity, F-75015, Paris, France.ORCID 0000-0001-8995-3614
Molly OhAinleDivisions of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.ORCID 0000-0001-5138-5367
Jared Carlson-StevermerSynthego Corporation, 3565 Haven Avenue, Menlo Park, CA, 94025, USA.ORCID 0000-0001-7824-0950
Jennifer OkiSynthego Corporation, 3565 Haven Avenue, Menlo Park, CA, 94025, USA.
Kevin HoldenSynthego Corporation, 3565 Haven Avenue, Menlo Park, CA, 94025, USA.ORCID 0000-0002-3091-4124
Gert ZimmerInstitute of Virology and Immunology, Bern & Mittelhäusern, Switzerland, and Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland.ORCID 0000-0002-2708-2507
Etienne Simon-LorièreInstitut Pasteur, G5 Evolutionary genomics of RNA viruses, F-75015, Paris, France.ORCID 0000-0001-8420-7743
Timothée BruelInstitut Pasteur, Université de Paris Cité, CNRS UMR 3569, Virus and Immunity, F-75015, Paris, France.ORCID 0000-0002-3952-4261
Olivier SchwartzInstitut Pasteur, Université de Paris Cité, CNRS UMR 3569, Virus and Immunity, F-75015, Paris, France.ORCID 0000-0002-0729-1475
Sylvie van der WerfInstitut Pasteur, Université de Paris Cité, CNRS UMR 3569, Molecular Genetics of RNA Viruses Unit, F-75015, Paris, France.ORCID 0000-0002-1148-4456
Nolwenn JouvenetInstitut Pasteur, Université de Paris Cité, CNRS UMR 3569, Virus sensing and signaling Unit, F-75015, Paris, France. nolwenn.jouvenet@pasteur.fr.ORCID 0000-0001-6103-6048
Sébastien NisoleInstitut de Recherche en Infectiologie de Montpellier (IRIM), , Université de Montpellier, CNRS, 34090, Montpellier, France. sebastien.nisole@inserm.fr.ORCID 0000-0001-9793-419X
Marco VignuzziInstitut Pasteur, Université de Paris Cité, CNRS UMR 3569, Viral populations and pathogenesis Unit, F-75015, Paris, France. marco.vignuzzi@pasteur.fr.ORCID 0000-0002-4400-771X
Ferdinand RoeschInstitut Pasteur, Université de Paris Cité, CNRS UMR 3569, Viral populations and pathogenesis Unit, F-75015, Paris, France. ferdinand.roesch@inrae.fr.ORCID 0000-0003-0702-7778
Centre National de la Recherche Scientifique · FRMenlo School · USInstitut Pasteur · FRFred Hutch Cancer Center · USUniversity of Bern · CH

Funding

Lentiviral Restriction: capsid and beyondR01AI147877 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI Molly OhAinle · 2019 to 2026
$4.2M
6 · The paper itself

Abstract

Interferon restricts SARS-CoV-2 replication in cell culture, but only a handful of Interferon Stimulated Genes with antiviral activity against SARS-CoV-2 have been identified. Here, we describe a functional CRISPR/Cas9 screen aiming at identifying SARS-CoV-2 restriction factors. We identify DAXX, a scaffold protein residing in PML nuclear bodies known to limit the replication of DNA viruses and retroviruses, as a potent inhibitor of SARS-CoV-2 and SARS-CoV replication in human cells. Basal expression of DAXX is sufficient to limit the replication of SARS-CoV-2, and DAXX over-expression further restricts infection. DAXX restricts an early, post-entry step of the SARS-CoV-2 life cycle. DAXX-mediated restriction of SARS-CoV-2 is independent of the SUMOylation pathway but dependent on its D/E domain, also necessary for its protein-folding activity. SARS-CoV-2 infection triggers the re-localization of DAXX to cytoplasmic sites and promotes its degradation. Mechanistically, this process is mediated by the viral papain-like protease (PLpro) and the proteasome. Together, these results demonstrate that DAXX restricts SARS-CoV-2, which in turn has evolved a mechanism to counteract its action.

Indexed as

COVID-19SARS-CoV-2Co-Repressor ProteinsCRISPR-Cas SystemsHumansInterferonsMolecular ChaperonesProteasome Endopeptidase ComplexCo-Repressor ProteinsDAXX protein, humanInterferonsMolecular ChaperonesProteasome Endopeptidase Complex

Identifiers

PMID35508460
PMCPMC9068693
OpenAlexW4225415220

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.