Evidence map›Paper›PMID 35508123›Full record

ArticleCell reports2022

HIV Tat and cocaine interactively alter genome-wide DNA methylation and gene expression and exacerbate learning and memory impairments.

Xiaojie Zhao, Fan Zhang, Suresh R Kandel, Frédéric Brau, Johnny J He

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

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  7. Alzheimer's disease protective allele ofmedRxiv : the preprint server for health sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Xiaojie ZhaoDepartment of Microbiology and Immunology, Chicago Medical School, Rosalind Franklin University, North Chicago, IL 60064, USA; Center for Cancer Cell Biology, Immunology and Infection, Rosalind Franklin University, North Chicago, IL 60064, USA; School of Graduate and Postdoctoral Studies, Rosalind Franklin University, North Chicago, IL 60064, USA.
Fan ZhangDepartment of Family Medicine, University of North Texas Health Science Center, Fort Worth, TX, USA.
Suresh R KandelDepartment of Microbiology and Immunology, Chicago Medical School, Rosalind Franklin University, North Chicago, IL 60064, USA; Center for Cancer Cell Biology, Immunology and Infection, Rosalind Franklin University, North Chicago, IL 60064, USA.
Frédéric BrauUniversité Côte d'Azur, CNRS, IPMC, Sophia-Antipolis 06560, France.
Johnny J HeDepartment of Microbiology and Immunology, Chicago Medical School, Rosalind Franklin University, North Chicago, IL 60064, USA; Center for Cancer Cell Biology, Immunology and Infection, Rosalind Franklin University, North Chicago, IL 60064, USA; School of Graduate and Postdoctoral Studies, Rosalind Franklin University, North Chicago, IL 60064, USA. Electronic address: johnny.he@rosalindfranklin.edu.
Rosalind Franklin University of Medicine and Science · USCentre National de la Recherche Scientifique · FRUniversity of North Texas · US

Funding

Vermont INBRE Administrative Supplement 2024 AWD 118P20GM103449 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI Julie Dragon · 2012 to 2026
$58.4M
HIV Infection and Latency In AstrocytesR01DA043162 · NIDA · UNIVERSITY OF NORTH TEXAS HLTH SCI CTR · PI HE, JOHNNY J · 2016 to 2020
$2.8M
miR-132, a new player in HIV/neuroAIDSR01NS094108 · NINDS · UNIVERSITY OF NORTH TEXAS HLTH SCI CTR · PI HE, JOHNNY J · 2015 to 2019
$2.7M
MECHANISMS OF HIV-1 ENTRY AND PATHOGENESIS IN ASTROCYTESR01NS039804 · NINDS · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI HE, JOHNNY J · 2000 to 2008
$2.3M
NIDA NIH HHS R01 DA043162NIGMS NIH HHS P20 GM103449NINDS NIH HHS R01 NS039804NINDS NIH HHS R01 NS094108
6 · The paper itself

Abstract

Cocaine use is a major comorbidity of HIV-associated neurocognitive disorder (HAND). In this study, we show that cocaine exposure worsens the learning and memory of doxycycline-inducible and brain-specific HIV Tat transgenic mice (iTat) and results in 14,838 hypermethylated CpG-related differentially methylated regions (DMRs) and 15,800 hypomethylated CpG-related DMRs, which are linked to 52 down- and 127 upregulated genes, respectively, in the hippocampus of iTat mice. These genes are mostly enriched at the neuronal function-, cell morphology-, and synapse formation-related extracellular matrix (ECM) receptor-ligand interaction pathway and mostly impacted in microglia. The accompanying neuropathological changes include swollen dendritic spines, increased synaptophysin expression, and diminished glial activation. We also find that sex (female) and age additively worsen the behavioral and pathological changes. These findings together indicate that chronic cocaine and long-term Tat expression interactively contribute to HAND, likely involving changes of DNA methylation and ECM receptor-ligand interactions.

Indexed as

CocaineAnimalsDNADNA MethylationFemaleGene ExpressionLigandsMemory DisordersMiceMice, Transgenictat Gene Products, Human Immunodeficiency VirusCocaineDNALigandstat Gene Products, Human Immunodeficiency VirusastrocytecocaineCP: Neurosciencedendritic spineDNA methylationextracellular matrix receptorHANDiTatlearning and memorymicrogliaTat

Identifiers

PMID35508123
PMCPMC9615417
OpenAlexW4229011635

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.