Evidence map›Paper›PMID 35507872›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Distinct roles of the Na

Erika A Riederer, Pierre Moënne-Loccoz, Francis I Valiyaveetil

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Conformational free energy landscape of a glutamate transporter and microscopic details of its transport mechanism.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Erika A RiedererDepartment of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, OR 97239.
Pierre Moënne-LoccozDepartment of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, OR 97239.ORCID 0000-0002-7684-7617
Francis I ValiyaveetilDepartment of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, OR 97239.ORCID 0000-0002-3387-8018
Oregon Health & Science University · US

Funding

The structural dynamics of a glutamate transporter homologueR37NS085318 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI BOUDKER, OLGA · 2014 to 2020
$4.3M
Probing functional mechanisms in K+ channels using unnatural mutagenesisR01GM087546 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI VALIYAVEETIL, FRANCIS · 2009 to 2022
$4.0M
Using unnatural amino acid mutagenesis to probe a glutamate transporter homologR21NS113561 · NINDS · OREGON HEALTH & SCIENCE UNIVERSITY · PI VALIYAVEETIL, FRANCIS · 2019 to 2019
$424k
HHS | NIH | National Institute of General Medical Sciences (NIGMS) R01GM087546HHS | NIH | National Institute of Neurological Disorders and Stroke (NINDS) R21NS113561HHS | NIH | National Institute of Neurological Disorders and Stroke (NINDS) R37NS085318NIGMS NIH HHS R01 GM087546NINDS NIH HHS R21 NS113561NINDS NIH HHS R37 NS085318
6 · The paper itself

Abstract

Glutamate transporters carry out the concentrative uptake of glutamate by harnessing the ionic gradients present across cellular membranes. A central step in the transport mechanism is the coupled binding of Na+ and substrate. The sodium coupled Asp transporter, GltPh is an archaeal homolog of glutamate transporters that has been extensively used to probe the transport mechanism. Previous studies have shown that hairpin-2 (HP2) functions as the extracellular gate for the aspartate binding site and plays a key role in the coupled binding of sodium and aspartate to GltPh. The binding sites for three Na+ ions (Na1-3) have been identified in GltPh, but the specific roles of the individual Na+ sites in the binding process have not been elucidated. In this study, we developed assays to probe Na+ binding to the Na1 and Na3 sites and to monitor the conformational switch in the NMDGT motif. We used these assays along with a fluorescence assay to monitor HP2 movement and EPR spectroscopy to show that Na+ binding to the Na3 site is required for the NMDGT conformational switch while Na+ binding to the Na1 site is responsible for the partial opening of HP2. Complete opening of HP2 requires the conformational switch of the NMDGT motif and therefore Na+ binding to both the Na1 and the Na3 sites. Based on our studies, we also propose an alternate pathway for the coupled binding of Na+ and Asp.

Indexed as

Amino Acid Transport System X-AGSodiumBinding SitesGlutamic AcidIonsAmino Acid Transport System X-AGGlutamic AcidIonsSodiumfluorescenceglutamate transportersunnatural amino acids

Identifiers

PMID35507872
PMCPMC9171649
OpenAlexW4229008189

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.