Evidence map›Paper›PMID 35507871›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Regulation mechanisms of the dual ATPase in KaiC.

Yoshihiko Furuike, Atsushi Mukaiyama, Shin-Ichi Koda, Damien Simon, Dongyan Ouyang, Kumiko Ito-Miwa, Shinji Saito, Eiki Yamashita, Taeko Nishiwaki-Ohkawa, Kazuki Terauchi and 2 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The inner workings of an ancient biological clock.Trends in biochemical sciences · 2024
    Review
  6. Structure-function relationship of KaiC around dawn.Biophysics and physicobiology · 2024
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yoshihiko FuruikeResearch Center of Integrative Molecular Systems, Institute for Molecular Science, National Institutes of Natural Sciences, Okazaki 444-8585, Japan.ORCID 0000-0002-4901-7394
Atsushi MukaiyamaResearch Center of Integrative Molecular Systems, Institute for Molecular Science, National Institutes of Natural Sciences, Okazaki 444-8585, Japan.ORCID 0000-0002-6736-631X
Shin-Ichi KodaDepartment of Theoretical and Computational Molecular Science, Institute for Molecular Science, National Institutes of Natural Sciences, Okazaki 444-8585, Japan.ORCID 0000-0003-0993-3678
Damien SimonResearch Center of Integrative Molecular Systems, Institute for Molecular Science, National Institutes of Natural Sciences, Okazaki 444-8585, Japan.ORCID 0000-0002-8717-8770
Dongyan OuyangResearch Center of Integrative Molecular Systems, Institute for Molecular Science, National Institutes of Natural Sciences, Okazaki 444-8585, Japan.
Kumiko Ito-MiwaDepartment of Biological Science, Division of Natural Science, Graduate school of Science and Institute for Advanced Research, Nagoya University, Nagoya 464-8602, Japan.ORCID 0000-0002-3579-1311
Shinji SaitoDepartment of Theoretical and Computational Molecular Science, Institute for Molecular Science, National Institutes of Natural Sciences, Okazaki 444-8585, Japan.ORCID 0000-0003-4982-4820
Eiki YamashitaInstitute for Protein Research, Osaka University, Suita 565-0871, Japan.ORCID 0000-0002-4278-0039
Taeko Nishiwaki-OhkawaGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.ORCID 0000-0003-1324-6651
Kazuki TerauchiGraduate School of Life Sciences, Ritsumeikan University, Kusatsu 525-8577, Japan.ORCID 0000-0002-0320-0636
Takao KondoDepartment of Biological Science, Division of Natural Science, Graduate school of Science and Institute for Advanced Research, Nagoya University, Nagoya 464-8602, Japan.ORCID 0000-0002-1813-4678
Shuji AkiyamaResearch Center of Integrative Molecular Systems, Institute for Molecular Science, National Institutes of Natural Sciences, Okazaki 444-8585, Japan.ORCID 0000-0002-7184-189X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

KaiC is a dual adenosine triphosphatase (ATPase), with one active site in its N-terminal domain and another in its C-terminal domain, that drives the circadian clock system of cyanobacteria through sophisticated coordination of the two sites. To elucidate the coordination mechanism, we studied the contribution of the dual-ATPase activities in the ring-shaped KaiC hexamer and these structural bases for activation and inactivation. At the N-terminal active site, a lytic water molecule is sequestered between the N-terminal domains, and its reactivity to adenosine triphosphate (ATP) is controlled by the quaternary structure of the N-terminal ring. The C-terminal ATPase activity is regulated mostly by water-incorporating voids between the C-terminal domains, and the size of these voids is sensitive to phosphoryl modification of S431. The up-regulatory effect on the N-terminal ATPase activity inversely correlates with the affinity of KaiC for KaiB, a clock protein constitutes the circadian oscillator together with KaiC and KaiA, and the complete dissociation of KaiB from KaiC requires KaiA-assisted activation of the dual ATPase. Delicate interactions between the N-terminal and C-terminal rings make it possible for the components of the dual ATPase to work together, thereby driving the assembly and disassembly cycle of KaiA and KaiB.

Indexed as

Circadian ClocksCyanobacteriaAdenosine TriphosphatasesBacterial ProteinsCircadian RhythmCircadian Rhythm Signaling Peptides and ProteinsCLOCK ProteinsPhosphorylationAdenosine TriphosphatasesBacterial ProteinsCircadian Rhythm Signaling Peptides and ProteinsCLOCK ProteinsATPasecircadian clockcyanobacteriaKaiCstructure

Identifiers

PMID35507871
PMCPMC9171630

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.