Evidence map›Paper›PMID 35507258›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

IMEx Databases: Displaying Molecular Interactions into a Single, Standards-Compliant Dataset.

Pablo Porras, Sandra Orchard, Luana Licata

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. The alliance of genome resources: transforming comparative genomics.Mammalian genome : official journal of the International Mammalian Genome Society · 2023
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Pablo PorrasEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK.
Sandra OrchardEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK.
Luana LicataDepartment of Biology, University of Rome Tor Vergata, Rome, Italy. luana.licata@uniroma2.it.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Molecular interaction databases aim to systematically capture and organize the experimental interaction information described in the scientific literature. These data can then be used to perform network analysis, to assign putative roles to uncharacterized proteins and to investigate their involvement in cellular pathways.This chapter gives a brief overview of publicly available molecular interaction databases and focuses on the members of the IMEx Consortium, on their curation policies and standard data formats. All of the goals achieved by IMEx databases over the last 15 years, the data types provided and the many different ways in which such data can be utilized by the research community, are described in detail. The IMEx databases curate molecular interaction data to the highest caliber, following a detailed curation model and supplying rich metadata by employing common curation rules and harmonized standards. The IMEx Consortium provides comprehensively annotated molecular interaction data integrated into a single, non-redundant, open access dataset.

Indexed as

Protein Interaction MappingProteinsDatabases, ChemicalDatabases, ProteinData ManagementProteinsBioinformaticsControlled vocabularyDatabasesManual curationMolecular interaction data standardsMolecular interactions

Identifiers

PMID35507258

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.