Evidence map›Paper›PMID 35504924›Full record

ArticleNature communications2022

IRF4 drives clonal evolution and lineage choice in a zebrafish model of T-cell lymphoma.

Stella Amanda, Tze King Tan, Jolynn Zu Lin Ong, Madelaine Skolastika Theardy, Regina Wan Ju Wong, Xiao Zi Huang, Muhammad Zulfaqar Ali, Yan Li, Zhiyuan Gong, Hiroshi Inagaki and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 2 countries.

Stella Amanda *Cancer Science Institute of Singapore, National University of Singapore, 117599, Singapore, Singapore.
Tze King Tan *Cancer Science Institute of Singapore, National University of Singapore, 117599, Singapore, Singapore.ORCID 0000-0003-1623-615X
Jolynn Zu Lin OngCancer Science Institute of Singapore, National University of Singapore, 117599, Singapore, Singapore.
Madelaine Skolastika TheardyCancer Science Institute of Singapore, National University of Singapore, 117599, Singapore, Singapore.
Regina Wan Ju WongCancer Science Institute of Singapore, National University of Singapore, 117599, Singapore, Singapore.
Xiao Zi HuangCancer Science Institute of Singapore, National University of Singapore, 117599, Singapore, Singapore.
Muhammad Zulfaqar AliCancer Science Institute of Singapore, National University of Singapore, 117599, Singapore, Singapore.
Yan LiDepartment of Biological Sciences, National University of Singapore, 117543, Singapore, Singapore.ORCID 0000-0001-8888-3386
Zhiyuan GongDepartment of Biological Sciences, National University of Singapore, 117543, Singapore, Singapore.ORCID 0000-0002-9660-5260
Hiroshi InagakiDepartment of Pathology and Molecular Diagnostics, Nagoya City University Graduate School of Medical Sciences, Nagoya, 467-8601, Japan.ORCID 0000-0001-6157-636X
Ee Yong FooDepartment of Pathology, Yong Loo Lin School of Medicine, National University of Singapore, 117599, Singapore, Singapore.
Brendan PangDepartment of Pathology, Yong Loo Lin School of Medicine, National University of Singapore, 117599, Singapore, Singapore.
Soo Yong TanDepartment of Pathology, Yong Loo Lin School of Medicine, National University of Singapore, 117599, Singapore, Singapore.
Shinsuke IidaDepartment of Hematology and Oncology, Nagoya City University Graduate School of Medical Sciences, Nagoya, Aichi, 467-8601, Japan.
Takaomi SandaCancer Science Institute of Singapore, National University of Singapore, 117599, Singapore, Singapore. takaomi_sanda@nus.edu.sg.ORCID 0000-0003-1621-4954
National University of Singapore · SGNagoya City University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

IRF4 is a master regulator of immunity and is also frequently overexpressed in mature lymphoid neoplasms. Here, we demonstrate the oncogenicity of IRF4 in vivo, its potential effects on T-cell development and clonal evolution using a zebrafish model. IRF4-transgenic zebrafish develop aggressive tumors with massive infiltration of abnormal lymphocytes that spread to distal organs. Many late-stage tumors are mono- or oligoclonal, and tumor cells can expand in recipient animals after transplantation, demonstrating their malignancy. Mutation of p53 accelerates tumor onset, increases penetrance, and results in tumor heterogeneity. Surprisingly, single-cell RNA-sequencing reveals that the majority of tumor cells are double-negative T-cells, many of which express tcr-γ that became dominant as the tumors progress, whereas double-positive T-cells are largely diminished. Gene expression and epigenetic profiling demonstrates that gata3, mycb, lrrn1, patl1 and psip1 are specifically activated in tumors, while genes responsible for T-cell differentiation including id3 are repressed. IRF4-driven tumors are sensitive to the BRD inhibitor.

Indexed as

LymphomaLymphoma, T-CellAnimalsCell DifferentiationClonal EvolutionZebrafish

Identifiers

PMID35504924
PMCPMC9065160
OpenAlexW4225410178

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.