Evidence map›Paper›PMID 35503780›Full record

ArticlePLoS pathogens2022

A neutralizing antibody target in early HIV-1 infection was recapitulated in rhesus macaques immunized with the transmitted/founder envelope sequence.

Sarah Welbourn, Srirupa Chakraborty, Jie E Yang, Anne S Gleinich, Sailaja Gangadhara, Salar Khan, Courtney Ferrebee, Bhrugu Yagnik, Samantha Burton, Tysheena Charles and 22 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 7 institutions in 2 countries.

Sarah WelbournYerkes National Primate Research Center, Emory University, Atlanta, Georgia, United States of America.
Srirupa ChakrabortyTheoretical Biology and Biophysics Group, Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America.
Jie E YangDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
Anne S GleinichComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States of America.
Sailaja GangadharaYerkes National Primate Research Center, Emory University, Atlanta, Georgia, United States of America.
Salar KhanYerkes National Primate Research Center, Emory University, Atlanta, Georgia, United States of America.
Courtney FerrebeeYerkes National Primate Research Center, Emory University, Atlanta, Georgia, United States of America.
Bhrugu YagnikYerkes National Primate Research Center, Emory University, Atlanta, Georgia, United States of America.
Samantha BurtonYerkes National Primate Research Center, Emory University, Atlanta, Georgia, United States of America.
Tysheena CharlesYerkes National Primate Research Center, Emory University, Atlanta, Georgia, United States of America.
S Abigail SmithYerkes National Primate Research Center, Emory University, Atlanta, Georgia, United States of America.
Danielle WilliamsYerkes National Primate Research Center, Emory University, Atlanta, Georgia, United States of America.
Rohini MopuriYerkes National Primate Research Center, Emory University, Atlanta, Georgia, United States of America.
Amit A UpadhyayYerkes National Primate Research Center, Emory University, Atlanta, Georgia, United States of America.
Justin ThompsonYerkes National Primate Research Center, Emory University, Atlanta, Georgia, United States of America.
Matt A PriceDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, California, United States of America.
Shiyu WangDepartment of Biostatistics and Bioinformatics, Rollins School of Public Health, Emory University, Atlanta, Georgia, United States of America.
Zhaohui QinDepartment of Biostatistics and Bioinformatics, Rollins School of Public Health, Emory University, Atlanta, Georgia, United States of America.
Xiaoying ShenDepartment of Surgery, Duke University, Durham, North Carolina, United States of America.
LaTonya D WilliamsDepartment of Surgery, Duke University, Durham, North Carolina, United States of America.
Nathan EiselDepartment of Surgery, Duke University, Durham, North Carolina, United States of America.
Tiffany PetersDepartment of Surgery, Duke University, Durham, North Carolina, United States of America.
Lu ZhangDepartment of Surgery, Duke University, Durham, North Carolina, United States of America.
William KilembeCenter for Family Health Research in Zambia (CFHRZ), Lusaka, Zambia.
Etienne KaritaProjet San Francisco, Kigali, Rwanda.
Georgia D TomarasDepartment of Surgery, Duke University, Durham, North Carolina, United States of America.
Steven E BosingerYerkes National Primate Research Center, Emory University, Atlanta, Georgia, United States of America.
Rama R AmaraYerkes National Primate Research Center, Emory University, Atlanta, Georgia, United States of America.
Parastoo AzadiComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States of America.
Elizabeth R WrightDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
Sandrasegaram GnanakaranTheoretical Biology and Biophysics Group, Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America.
Cynthia A DerdeynYerkes National Primate Research Center, Emory University, Atlanta, Georgia, United States of America.ORCID 0000-0002-1220-513X
Emory University · USDuke University · USLos Alamos National Laboratory · USUniversity of Georgia · USUniversity of Wisconsin–Madison · USCentre for Infectious Disease Research in Zambia · ZMInternational AIDS Vaccine Initiative · US

Funding

Yerkes National Primate Research Center Role of type-I IFN in regulating COVID-19 induced inflammation and pathogenesisP51OD011132 · OD · EMORY UNIVERSITY · PI Joon Sup Lee · 2012 to 2026
$167.0M
Virology and Molecular Biomarkers CoreP30AI050409 · NIAID · EMORY UNIVERSITY · PI Ann M Chahroudi, Colleen F Kelley · 2002 to 2026
$74.0M
Social and Behavioral Sciences CoreP30AI064518 · NIAID · DUKE UNIVERSITY · PI Nwora Lance Okeke · 2005 to 2026
$50.5M
Viral Testing Core-Maintenance of the SPF Breeding Colonies at Yerkes National Primate Research CenterU42OD011023 · OD · EMORY UNIVERSITY · PI Joyce Kimberly Cohen · 2018 to 2026
$17.5M
SPF Breeding Colonies at the Yerkes NPRCU24OD011023 · OD · EMORY UNIVERSITY · PI COHEN, JOYCE KIMBERLY · 2012 to 2017
$8.2M
Role of V1V2 in HIV transmission and pathogenesisR01AI058706 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DERDEYN, CYNTHIA ANN · 2004 to 2016
$6.7M
Using DNA/MVA/protein immunization of rhesus macaques to investigate how the background of the HIV-1 envelope and nature of the protein boost shape the genetic and functional antibody landscape.R01AI128837 · NIAID · EMORY UNIVERSITY · PI BOSINGER, STEVEN EDWARD, DERDEYN, CYNTHIA ANN · 2017 to 2021
$5.9M
National Glycoscience Resource- CCRC Service and Training - NGlycoR@CCRCR24GM137782 · NIGMS · UNIVERSITY OF GEORGIA · PI Parastoo Azadi · 2020 to 2026
$5.2M
Discovery of Novel Epitopes for Antibody Dependent Cell-mediated Cytotoxicity Against HIV-1 Infected CellsR21AI150292 · NIAID · EMORY UNIVERSITY · PI DERDEYN, CYNTHIA ANN · 2020 to 2021
$491k
NIAID NIH HHS P30 AI050409NIAID NIH HHS P30 AI064518NIAID NIH HHS R01 AI058706NIAID NIH HHS R01 AI128837NIAID NIH HHS R21 AI150292NIGMS NIH HHS R24 GM137782NIH HHS P51 OD011132NIH HHS U24 OD011023NIH HHS U42 OD011023
6 · The paper itself

Abstract

Transmitted/founder (T/F) HIV-1 envelope proteins (Envs) from infected individuals that developed neutralization breadth are likely to possess inherent features desirable for vaccine immunogen design. To explore this premise, we conducted an immunization study in rhesus macaques (RM) using T/F Env sequences from two human subjects, one of whom developed potent and broad neutralizing antibodies (Z1800M) while the other developed little to no neutralizing antibody responses (R66M) during HIV-1 infection. Using a DNA/MVA/protein immunization protocol, 10 RM were immunized with each T/F Env. Within each T/F Env group, the protein boosts were administered as either monomeric gp120 or stabilized trimeric gp140 protein. All vaccination regimens elicited high titers of antigen-specific IgG, and two animals that received monomeric Z1800M Env gp120 developed autologous neutralizing activity. Using early Env escape variants isolated from subject Z1800M as guides, the serum neutralizing activity of the two immunized RM was found to be dependent on the gp120 V5 region. Interestingly, the exact same residues of V5 were also targeted by a neutralizing monoclonal antibody (nmAb) isolated from the subject Z1800M early in infection. Glycan profiling and computational modeling of the Z1800M Env gp120 immunogen provided further evidence that the V5 loop is exposed in this T/F Env and was a dominant feature that drove neutralizing antibody targeting during infection and immunization. An expanded B cell clonotype was isolated from one of the neutralization-positive RM and nmAbs corresponding to this group demonstrated V5-dependent neutralization similar to both the RM serum and the human Z1800M nmAb. The results demonstrate that neutralizing antibody responses elicited by the Z1800M T/F Env in RM converged with those in the HIV-1 infected human subject, illustrating the potential of using immunogens based on this or other T/F Envs with well-defined immunogenicity as a starting point to drive breadth.

Indexed as

AIDS VaccinesHIV-1HIV InfectionsAnimalsAntibodies, Neutralizingenv Gene Products, Human Immunodeficiency VirusHIV AntibodiesHIV Envelope Protein gp120HumansMacaca mulattaAIDS VaccinesAntibodies, Neutralizingenv Gene Products, Human Immunodeficiency VirusHIV AntibodiesHIV Envelope Protein gp120

Identifiers

PMID35503780
PMCPMC9106183
OpenAlexW4225384878

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.