Evidence map›Paper›PMID 35503435›Full record

ArticleAutophagy2023

SAMS-1 coordinates HLH-30/TFEB and PHA-4/FOXA activities through histone methylation to mediate dietary restriction-induced autophagy and longevity.

Chiao-Yin Lim, Huan-Ting Lin, Caroline Kumsta, Tzu-Chiao Lu, Feng-Yung Wang, Yun-Hsuan Kang, Malene Hansen, Tsui-Ting Ching, Ao-Lin Hsu

Open access · greenAbstract read
In one paragraph

Article in Autophagy, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 28 citations in OpenAlex.

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  12. Genetic mapping of lifespan and mitochondrial stress response inbioRxiv : the preprint server for biology · 2025
    Article
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  17. Mechanisms and rationales of SAM homeostasis.Trends in biochemical sciences · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Chiao-Yin LimTaiwan International Graduate Program in Molecular Medicine, National Yang Ming Chiao Tung University and Academia Sinica, Taipei, Taiwan.ORCID 0000-0002-3570-2817
Huan-Ting LinInstitute of Biopharmaceutical Sciences, National Yang Ming Chiao Tung University, Taipei, Taiwan.
Caroline KumstaProgram of Development, Aging and Regeneration, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California, USA.
Tzu-Chiao LuInstitute of Biochemistry and Molecular Biology, National Yang Ming Chiao Tung University, Taipei, Taiwan.
Feng-Yung WangInstitute of Biochemistry and Molecular Biology, National Yang Ming Chiao Tung University, Taipei, Taiwan.
Yun-Hsuan KangInstitute of Biopharmaceutical Sciences, National Yang Ming Chiao Tung University, Taipei, Taiwan.
Malene HansenProgram of Development, Aging and Regeneration, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California, USA.ORCID 0000-0002-6828-8640
Tsui-Ting ChingInstitute of Biopharmaceutical Sciences, National Yang Ming Chiao Tung University, Taipei, Taiwan.ORCID 0000-0001-7650-1766
Ao-Lin HsuInstitute of Biochemistry and Molecular Biology, National Yang Ming Chiao Tung University, Taipei, Taiwan.ORCID 0000-0002-2864-3134
National Yang Ming Chiao Tung University · TWSanford Burnham Prebys Medical Discovery Institute · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Regulation of the Autophagy Process in Organismal AgingR01AG038664 · NIA · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI Malene Hansen · 2011 to 2026
$6.4M
Role of Selective Autophagy in Organismal HealthR01AG072791 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI Malene Hansen · 2021 to 2026
$2.5M
Attenuation of cancellous osteopenia by in vivo loadingR01AG028664 · NIA · CORNELL UNIVERSITY · PI VAN DER MEULEN, MARJOLEIN C · 2006 to 2009
$1.0M
Transcriptional Regulation of Autophagy in Promoting Proteostasis Upon Hormetic StressR21AG058038 · NIA · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI KUMSTA, CAROLINE · 2018 to 2019
$536k
NIA NIH HHS R01 AG028664NIA NIH HHS R01 AG038664NIA NIH HHS R01 AG072791NIA NIH HHS R21 AG058038NIH HHS P40 OD010440
6 · The paper itself

Abstract

Dietary restriction (DR) is known to promote autophagy to exert its longevity effect. While SAMS-1 (S-adenosyl methionine synthetase-1) has been shown to be a key mediator of the DR response, little is known about the roles of S-adenosyl methionine (SAM) and SAM-dependent methyltransferase in autophagy and DR-induced longevity. In this study, we show that DR and SAMS-1 repress the activity of SET-2, a histone H3K4 methyltransferase, by limiting the availability of SAM. Consequently, the reduced H3K4me3 levels promote the expression and activity of two transcription factors, HLH-30/TFEB and PHA-4/FOXA, which both regulate the transcription of autophagy-related genes. We then find that HLH-30/TFEB and PHA-4/FOXA act collaboratively on their common target genes to mediate the transcriptional response of autophagy-related genes and consequently the lifespan of the animals. Our study thus shows that the SAMS-1-SET-2 axis serves as a nutrient-sensing module to epigenetically coordinate the activation of HLH-30/TFEB and PHA-4/FOXA transcription factors to control macroautophagy/autophagy and longevity in response to DR.

Indexed as

Caenorhabditis elegans ProteinsLongevity5-Methyltetrahydrofolate-Homocysteine S-MethyltransferaseAnimalsAutophagyBasic Helix-Loop-Helix ProteinsCaenorhabditis elegansHistonesMethionineMethylationTranscription Factors5-Methyltetrahydrofolate-Homocysteine S-MethyltransferaseBasic Helix-Loop-Helix ProteinsCaenorhabditis elegans ProteinsHistonesHLH-30 protein, C elegansMethionineTranscription FactorsAgingCaenorhabditis. elegansdietary restrictionhistone methylationHLH-30/TFEBPHA-4/FOXAS-adenosyl methionineSET-2 histone methyltransferase

Identifiers

PMID35503435
PMCPMC9809948
OpenAlexW4225314164

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.