Evidence map›Paper›PMID 35503419›Full record

ArticleJournal of medicinal chemistry2022

Differential Modulation of Nuclear Receptor LRH-1 through Targeting Buried and Surface Regions of the Binding Pocket.

Michael L Cato, Jeffery L Cornelison, Racheal M Spurlin, Valentine V Courouble, Anamika B Patel, Autumn R Flynn, Alyssa M Johnson, C Denise Okafor, Filipp Frank, Emma H D'Agostino and 3 more

Open access · greenAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Illuminating ligand-induced dynamics in nuclear receptors through MD simulations.Biochimica et biophysica acta. Gene regulatory mechanisms · 2024
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Michael L CatoDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322, United States.
Jeffery L CornelisonDepartment of Chemistry, Emory University, Atlanta, Georgia 30322, United States.
Racheal M SpurlinDepartment of Chemistry, Emory University, Atlanta, Georgia 30322, United States.
Valentine V CouroubleScripps Research Institute, Jupiter, Florida 33458, United States.ORCID 0000-0001-5953-7767
Anamika B PatelDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322, United States.
Autumn R FlynnDepartment of Chemistry, Emory University, Atlanta, Georgia 30322, United States.
Alyssa M JohnsonDepartment of Chemistry, Emory University, Atlanta, Georgia 30322, United States.
C Denise OkaforDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322, United States.
Filipp FrankDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322, United States.ORCID 0000-0001-8680-2757
Emma H D'AgostinoDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322, United States.
Patrick R GriffinScripps Research Institute, Jupiter, Florida 33458, United States.ORCID 0000-0002-3404-690X
Nathan T JuiDepartment of Chemistry, Emory University, Atlanta, Georgia 30322, United States.ORCID 0000-0001-5315-0270
Eric A OrtlundDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322, United States.ORCID 0000-0001-8855-3029
Emory University · USScripps Research Institute · US

Funding

Yerkes National Primate Research Center Role of type-I IFN in regulating COVID-19 induced inflammation and pathogenesisP51OD011132 · OD · EMORY UNIVERSITY · PI Joon Sup Lee · 2012 to 2026
$167.0M
Training Program in Biochemistry, Cell and Molecular BiologyT32GM008367 · NIGMS · EMORY UNIVERSITY · PI BOISE, LAWRENCE H., CORBETT, ANITA H. · 1990 to 2019
$5.6M
Targeting the orphan nuclear receptor LRH-1 with small moleculesR01DK115213 · NIDDK · EMORY UNIVERSITY · PI John Winter Calvert, Eric A Ortlund · 2017 to 2026
$4.6M
Illumina NovaSeq 6000 High Throughput DNA Sequencer for Emory UniversityS10OD026799 · OD · EMORY UNIVERSITY · PI BOSINGER, STEVEN EDWARD · 2019 to 2019
$985k
Modulating Coregulator Preference of Liver Receptor Homolog-1 with Small MoleculesF31DK122745 · NIDDK · EMORY UNIVERSITY · PI CATO, MICHAEL LEE · 2020 to 2022
$138k
NIDDK NIH HHS F31 DK122745NIDDK NIH HHS R01 DK115213NIGMS NIH HHS T32 GM008367NIH HHS P51 OD011132NIH HHS S10 OD026799
6 · The paper itself

Abstract

Liver receptor homologue-1 (LRH-1) is a phospholipid-sensing nuclear receptor that has shown promise as a target for alleviating intestinal inflammation and metabolic dysregulation in the liver. LRH-1 contains a large ligand-binding pocket, but generating synthetic modulators has been challenging. We have had recent success generating potent and efficacious agonists through two distinct strategies. We targeted residues deep within the pocket to enhance compound binding and residues at the mouth of the pocket to mimic interactions made by phospholipids. Here, we unite these two designs into one molecule to synthesize the most potent LRH-1 agonist to date. Through a combination of global transcriptomic, biochemical, and structural studies, we show that selective modulation can be driven through contacting deep versus surface polar regions in the pocket. While deep pocket contacts convey high affinity, contacts with the pocket mouth dominate allostery and provide a phospholipid-like transcriptional response in cultured cells.

Indexed as

PhospholipidsReceptors, Cytoplasmic and NuclearCell LinePhospholipidsReceptors, Cytoplasmic and Nuclear

Identifiers

PMID35503419
PMCPMC10026694
OpenAlexW4225374991

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.