Evidence map›Paper›PMID 35502904›Full record

ArticlemBio2022

Genome-Wide Knockout Screen Identifies Human Sialomucin CD164 as an Essential Entry Factor for Lymphocytic Choriomeningitis Virus.

Jamin Liu, Kristeene A Knopp, Elze Rackaityte, Chung Yu Wang, Matthew T Laurie, Sara Sunshine, Andreas S Puschnik, Joseph L DeRisi

Open access · goldAbstract read
In one paragraph

Article in mBio, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Identification of CD164 as an essential entry receptor for divergent adeno-associated viruses.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  8. Article
  9. Review
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  12. Review
  13. Entry inhibitors as arenavirus antivirals.Frontiers in microbiology · 2024
    Review
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  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jamin LiuDepartment of Biochemistry and Biophysics, University of California, San Franciscogrid.266102.1, San Francisco, California, USA.ORCID 0000-0001-6386-3709
Kristeene A KnoppDepartment of Biochemistry and Biophysics, University of California, San Franciscogrid.266102.1, San Francisco, California, USA.
Elze RackaityteDepartment of Biochemistry and Biophysics, University of California, San Franciscogrid.266102.1, San Francisco, California, USA.ORCID 0000-0003-3889-8082
Chung Yu WangChan Zuckerberg Biohub, San Francisco, California, USA.
Matthew T LaurieDepartment of Biochemistry and Biophysics, University of California, San Franciscogrid.266102.1, San Francisco, California, USA.ORCID 0000-0002-3526-7368
Sara SunshineDepartment of Biochemistry and Biophysics, University of California, San Franciscogrid.266102.1, San Francisco, California, USA.ORCID 0000-0002-1897-5063
Andreas S PuschnikChan Zuckerberg Biohub, San Francisco, California, USA.ORCID 0000-0002-9605-9458
Joseph L DeRisiDepartment of Biochemistry and Biophysics, University of California, San Franciscogrid.266102.1, San Francisco, California, USA.ORCID 0000-0002-4611-9205
University of California, San Francisco · USChan Zuckerberg Initiative (United States) · US

Funding

Microbial Pathogenesis and Host DefenseT32AI060537 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Joanne N. Engel · 2004 to 2026
$6.5M
Identification and Characterization of the Antiviral Response to RSV Infection: A Single Cell ApproachF31AI150007 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SUNSHINE, SARA · 2020 to 2022
$116k
NIAID NIH HHS F31 AI150007NIAID NIH HHS T32 AI060537
6 · The paper itself

Abstract

Lymphocytic choriomeningitis virus (LCMV) is a well-studied mammarenavirus that can be fatal in congenital infections. However, our understanding of LCMV and its interactions with human host factors remains incomplete. Here, host determinants affecting LCMV infection were investigated through a genome-wide CRISPR knockout screen in A549 cells, a human lung adenocarcinoma line. We identified and validated a variety of novel host factors that play a functional role in LCMV infection. Among these, knockout of the sialomucin CD164, a heavily glycosylated transmembrane protein, was found to ablate infection with multiple LCMV strains but not other hemorrhagic mammarenaviruses in several cell types. Further characterization revealed a dependency of LCMV entry on the cysteine-rich domain of CD164, including an N-linked glycosylation site at residue 104 in that region. Given the documented role of LCMV with respect to transplacental human infections, CD164 expression was investigated in human placental tissue and placental cell lines. CD164 was found to be highly expressed in the cytotrophoblast cells, an initial contact site for pathogens within the placenta, and LCMV infection in placental cells was effectively blocked using a monoclonal antibody specific to the cysteine-rich domain of CD164. Together, this study identifies novel factors associated with LCMV infection of human tissues and highlights the importance of CD164, a sialomucin that previously had not been associated with viral infection.

Indexed as

EndolynLymphocytic ChoriomeningitisLymphocytic choriomeningitis virusCysteineFemaleHumansPlacentaPregnancySialomucinsCD164 protein, humanCysteineEndolynSialomucinsCD164CRISPR screenlymphocytic choriomeningitis virusviral entry

Identifiers

PMID35502904
PMCPMC9239079
OpenAlexW4225318174

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.