Evidence map›Paper›PMID 35502723›Full record

ArticleJournal of cell science2022

Single-cell analysis reveals the Comma-1D cell line as a unique model for mammary gland development and breast cancer.

Rachel L Werner, Erin A Nekritz, Koon-Kiu Yan, Bensheng Ju, Bridget Shaner, John Easton, Jiyang Yu, Jose Silva

Open access · greenAbstract read
In one paragraph

Article in Journal of cell science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
  3. [Application progress of single-cell RNA sequencing technology in breast development and related diseases].Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Rachel L WernerGraduate School, Department of Pathology, Icahn School of Medicine at Mount Sinai Hospital, New York, NY 10029, USA.
Erin A NekritzGraduate School, Department of Pathology, Icahn School of Medicine at Mount Sinai Hospital, New York, NY 10029, USA.ORCID 0000-0002-1916-5193
Koon-Kiu YanDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Bensheng JuDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Bridget ShanerDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.ORCID 0000-0002-2312-2196
John EastonDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Jiyang YuDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.ORCID 0000-0003-1244-4429
Jose SilvaGraduate School, Department of Pathology, Icahn School of Medicine at Mount Sinai Hospital, New York, NY 10029, USA.ORCID 0000-0001-5147-8950
St. Jude Children's Research Hospital · USThe Graduate Center, CUNY · US

Funding

Intracellular and Intercellular Network Rewiring and Hidden Driver Inference from Single-Cell DataR01GM134382 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI YU, JIYANG · 2019 to 2023
$1.7M
American Lebanese Syrian Associated CharitiesIcahn School of Medicine at Mount SinaiNIGMS NIH HHS R01 GM134382
6 · The paper itself

Abstract

The mammary gland epithelial tree contains two distinct cell populations, luminal and basal. The investigation of how this heterogeneity is developed and how it influences tumorigenesis has been hampered by the need to perform studies on these populations using animal models. Comma-1D is an immortalized mouse mammary epithelial cell line that has unique morphogenetic properties. By performing single-cell RNA-seq studies, we found that Comma-1D cultures consist of two main populations with luminal and basal features, and a smaller population with mixed lineage and bipotent characteristics. We demonstrated that multiple transcription factors associated with the differentiation of the mammary epithelium in vivo also modulate this process in Comma-1D cultures. Additionally, we found that only cells with luminal features were able to acquire transformed characteristics after an oncogenic HER2 (also known as ERBB2) mutant was introduced in their genomes. Overall, our studies characterize, at a single-cell level, the heterogeneity of the Comma-1D cell line and illustrate how Comma-1D cells can be used as an experimental model to study both the differentiation and the transformation processes in vitro.

Indexed as

Breast NeoplasmsCell LineMammary Glands, AnimalAnimalsEpithelial CellsFemaleMiceSingle-Cell AnalysisBreast cancerComma-1DMammary epithelium differentiationOncogenesisStem cells

Identifiers

PMID35502723
PMCPMC9189430
OpenAlexW4225400574

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.