Evidence map›Paper›PMID 35502381›Full record

ArticleQuantitative imaging in medicine and surgery2022

Automated knee cartilage segmentation for heterogeneous clinical MRI using generative adversarial networks with transfer learning.

Mingrui Yang, Ceylan Colak, Kishore K Chundru, Sibaji Gaj, Andreas Nanavati, Morgan H Jones, Carl S Winalski, Naveen Subhas, Xiaojuan Li

Abstract read
In one paragraph

Article in Quantitative imaging in medicine and surgery, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

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0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Review
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  6. A review of 3D printed medical implant design.3D printing in medicine · 2026
    Article
  7. Article
  8. Review
  9. Article
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  12. Article
  13. Imaging of knee osteoarthritis: a review of multimodal diagnostic approach.Quantitative imaging in medicine and surgery · 2023
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Early knee OA definition-what do we know at this stage? An imaging perspective.Therapeutic advances in musculoskeletal disease · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Mingrui YangDepartment of Biomedical Engineering, Lerner Research Institute, Cleveland Clinic, Cleveland, OH, USA.
Ceylan ColakDepartment of Diagnostic Radiology, Imaging Institute, Cleveland Clinic, Cleveland, OH, USA.
Kishore K ChundruDepartment of Diagnostic Radiology, Imaging Institute, Cleveland Clinic, Cleveland, OH, USA.
Sibaji GajDepartment of Biomedical Engineering, Lerner Research Institute, Cleveland Clinic, Cleveland, OH, USA.
Andreas NanavatiDepartment of Biomedical Engineering, Lerner Research Institute, Cleveland Clinic, Cleveland, OH, USA.
Morgan H JonesDepartment of Orthopaedic Surgery, Brigham and Women's Hospital, Boston, MA, USA.
Carl S WinalskiDepartment of Biomedical Engineering, Lerner Research Institute, Cleveland Clinic, Cleveland, OH, USA.
Naveen SubhasProgram of Advanced Musculoskeletal Imaging (PAMI), Cleveland Clinic, Cleveland, OH, USA.
Xiaojuan LiDepartment of Biomedical Engineering, Lerner Research Institute, Cleveland Clinic, Cleveland, OH, USA.

Funding

Imaging post-traumatic osteoarthritis 10-years after ACL reconstruction: a multicenter cohort study with quantitative MRIR01AR075422 · NIAMS · CLEVELAND CLINIC LERNER COM-CWRU · PI LI, XIAOJUAN, SPINDLER, KURT PAUL · 2019 to 2023
$4.6M
Multi-Vendor Multi-Site Novel Accelerated MRI RelaxometryR01AR077452 · NIAMS · CLEVELAND CLINIC LERNER COM-CWRU · PI LI, XIAOJUAN · 2020 to 2025
$3.6M
MRI Predictors of Outcome after Arthroscopic Partial MeniscectomyR01AR073512 · NIAMS · CLEVELAND CLINIC LERNER COM-CWRU · PI SUBHAS, NAVEEN · 2019 to 2021
$630k
NIAMS NIH HHS R01 AR073512NIAMS NIH HHS R01 AR075422NIAMS NIH HHS R01 AR077452
6 · The paper itself

Abstract

Background: This study aimed to build a deep learning model to automatically segment heterogeneous clinical MRI scans by optimizing a pre-trained model built from a homogeneous research dataset with transfer learning. Methods: Conditional generative adversarial networks pretrained on the Osteoarthritis Initiative MR images was transferred to 30 sets of heterogenous MR images collected from clinical routines. Two trained radiologists manually segmented the 30 sets of clinical MR images for model training, validation and test. The model performance was compared to models trained from scratch with different datasets, as well as two radiologists. A 5-fold cross validation was performed. Results: The transfer learning model obtained an overall averaged Dice coefficient of 0.819, an averaged 95 percentile Hausdorff distance of 1.463 mm, and an averaged average symmetric surface distance of 0.350 mm on the 5 random holdout test sets. A 5-fold cross validation had a mean Dice coefficient of 0.801, mean 95 percentile Hausdorff distance of 1.746 mm, and mean average symmetric surface distance of 0.364 mm. It outperformed other models and performed similarly as the radiologists. Conclusions: A transfer learning model was able to automatically segment knee cartilage, with performance comparable to human, using heterogeneous clinical MR images with a small training data size. In addition, the model proved robust when tested through cross validation and on images from a different vendor. We found it feasible to perform fully automated cartilage segmentation of clinical knee MR images, which would facilitate the clinical application of quantitative MRI techniques and other prediction models for improved patient treatment planning.

Indexed as

automated segmentationclinical knee MRIdeep learningGenerative adversarial networkstransfer learning

Identifiers

PMID35502381
PMCPMC9014147

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.