Evidence map›Paper›PMID 35502337›Full record

ArticleBioMed research international2022

Recognition of Protein Network for Bioinformatics Knowledge Analysis Using Support Vector Machine.

Arshpreet Kaur, Abhijit Chitre, Kirti Wanjale, Pankaj Kumar, Shahajan Miah, Arnold C Alguno

RetractedAbstract readRetracted Publication
In one paragraph

Article in BioMed research international, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Arshpreet KaurGNA University, Village Hargobindgarh, Phagwara, Punjab, India.ORCID https://orcid.org/0000-0002-9333-9032
Abhijit ChitreDepartment of Electronics and Telecommunications, Vishwakarma Institute of Information Technology, Savitribai Phule Pune University, Pune, Maharashtra, India.ORCID https://orcid.org/0000-0001-7917-5548
Kirti WanjaleDepartment of Computer Engineering, Vishwakarma Institute of Information Technology, Savitribai Phule Pune University, Pune, Maharashtra, India.ORCID https://orcid.org/0000-0003-4271-504X
Pankaj KumarDepartment of Computer Science & Engineering, Lloyd Institute of Engineering & Technology, Greater Noida, 201306 Uttar Pradesh, India.ORCID https://orcid.org/0000-0001-5401-8482
Shahajan MiahDepartment of EEE, Bangladesh University of Business and Technology (BUBT), Dhaka, Bangladesh.ORCID https://orcid.org/0000-0002-4928-3449
Arnold C AlgunoDepartment of Physics, Mindanao State University-Iligan Institute of Technology, Tibanga Highway, Iligan City 9200, Philippines.ORCID https://orcid.org/0000-0002-6402-6184

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein is the material foundation of living things, and it directly takes part in and runs the process of living things itself. Predicting protein complexes helps us understand the structure and function of complexes, and it is an important foundation for studying how cells work. Genome-wide protein interaction (PPI) data is growing as high-throughput experiments become more common. The aim of this research is that it provides a dual-tree complex wavelet transform which is used to find out about the structure of proteins. It also identifies the secondary structure of protein network. Many computer-based methods for predicting protein complexes have also been developed in the field. Identifying the secondary structure of a protein is very important when you are studying protein characteristics and properties. This is how the protein sequence is added to the distance matrix. The scope of this research is that it can confidently predict certain protein complexes rapidly, which compensates for shortcomings in biological research. The three-dimensional coordinates of C atom are used to do this. According to the texture information in the distance matrix, the matrix is broken down into four levels by the double-tree complex wavelet transform because it has four levels. The subband energy and standard deviation in different directions are taken, and then, the two-dimensional feature vector is used to show the secondary structure features of the protein in a way that is easy to understand. Then, the KNN and SVM classifiers are used to classify the features that were found. Experiments show that a new feature called a dual-tree complex wavelet can improve the texture granularity and directionality of the traditional feature extraction method, which is called secondary structure.

Indexed as

Computational BiologySupport Vector MachineProteinsProtein Structure, SecondaryWavelet AnalysisProteins

Identifiers

PMID35502337
PMCPMC9056223

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.