Evidence map›Paper›PMID 35501690›Full record

ArticleBMC genomics2022

Chromosomal localization of cohesin is differentially regulated by WIZ, WAPL, and G9a.

Megan Justice, Audra F Bryan, Juanita C Limas, Jeanette Gowen Cook, Jill M Dowen

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Megan JusticeIntegrative Program for Biological and Genome Sciences, University of North Carolina, Chapel Hill, NC, USA.ORCID https://orcid.org/0000-0001-5158-1720
Audra F BryanIntegrative Program for Biological and Genome Sciences, University of North Carolina, Chapel Hill, NC, USA.ORCID https://orcid.org/0000-0002-8161-0884
Juanita C LimasDepartment of Pharmacology, University of North Carolina, Chapel Hill, NC, USA.ORCID https://orcid.org/0000-0001-6384-8787
Jeanette Gowen CookCurriculum in Genetics and Molecular Biology, University of North Carolina, Chapel Hill, NC, USA.ORCID https://orcid.org/0000-0003-0849-7405
Jill M DowenIntegrative Program for Biological and Genome Sciences, University of North Carolina, Chapel Hill, NC, USA. jilldowen@unc.edu.ORCID https://orcid.org/0000-0001-9776-1989
University of North Carolina at Chapel Hill · US

Funding

UNC Initiative for Maximizing Student DevelopmentR25GM055336 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI COOK, JEANETTE GOWEN, KASH, THOMAS L. · 1996 to 2023
$12.1M
NRSA IN GENETICST32GM007092 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SEKELSKY, JEFF J. · 1985 to 2019
$5.9M
Replication Licensing and the Cell CycleR01GM083024 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI COOK, JEANETTE GOWEN · 2009 to 2020
$2.9M
Cell Cycle Dynamics that Ensure Genome MaintenanceR35GM141833 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI COOK, JEANETTE GOWEN · 2021 to 2025
$2.8M
Regulation of chromosome structure and gene expression by architectural proteinsR35GM124764 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DOWEN, JILL · 2017 to 2021
$2.0M
Cancer Epigenetics Training GrantT32CA217824 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI WEISSMAN, BERNARD E. · 2017 to 2021
$1.8M
NCI NIH HHS T32 CA217824NIGMS NIH HHS R01 GM083024NIGMS NIH HHS R01GM083024NIGMS NIH HHS R25 GM055336NIGMS NIH HHS R25GM055336NIGMS NIH HHS R35 GM124764NIGMS NIH HHS R35GM124764NIGMS NIH HHS R35 GM141833NIGMS NIH HHS T32 GM007092NIH HHS T32GM007092
6 · The paper itself

Abstract

backgroundThe cohesin complex is essential for proper chromosome structure and gene expression. Defects in cohesin subunits and regulators cause changes in cohesin complex dynamics and thereby alter three-dimensional genome organization. However, the molecular mechanisms that drive cohesin localization and function remain poorly understood.

resultsIn this study, we observe that loss of WIZ causes changes to cohesin localization that are distinct from loss of the known WIZ binding partner G9a. Whereas loss of WIZ uniformly increases cohesin levels on chromatin at known binding sites and leads to new, ectopic cohesin binding sites, loss of G9a does not. Ectopic cohesin binding on chromatin after the loss of WIZ occurs at regions that are enriched for activating histone modifications and transcription factors motifs. Furthermore, loss of WIZ causes changes in cohesin localization that are distinct from those observed by loss of WAPL, the canonical cohesin unloading factor.

conclusionsThe evidence presented here suggests that WIZ can function independently from its previously identified role with G9a and GLP in heterochromatin formation. Furthermore, while WIZ limits the levels and localization pattern of cohesin across the genome, it appears to function independently of WAPL-mediated cohesin unloading.

Indexed as

Cell Cycle ProteinsChromosomal Proteins, Non-HistoneChromatinCohesinsTranscription FactorsCell Cycle ProteinsChromatinChromosomal Proteins, Non-HistoneCohesinsTranscription FactorsChromatinChromosomeCohesinGenomeLocalizationOrganizationStructureWIZ

Identifiers

PMID35501690
PMCPMC9063240
OpenAlexW4225291768

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.