Evidence map›Paper›PMID 35501522›Full record

ArticleWorld journal of microbiology & biotechnology2022

Directed evolution of the PobR allosteric transcription factor to generate a biosensor for 4-hydroxymandelic acid.

YaoYao Liang, Juan Luo, Chenhao Yang, Shuning Guo, Bowen Zhang, Fengqianrui Chen, Kairui Su, Yulong Zhang, Yi Dong, Zhihao Wang and 3 more

Abstract read
PubMed Publisher
In one paragraph

Article in World journal of microbiology & biotechnology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

YaoYao Liang *School of Life Science, Northeast Forestry University, Harbin, 150040, Heilongjiang, People's Republic of China.
Juan Luo *School of Life Science, Northeast Forestry University, Harbin, 150040, Heilongjiang, People's Republic of China.
Chenhao Yang *Aulin College, Northeast Forestry University, Harbin, 150040, Heilongjiang, People's Republic of China.
Shuning GuoAulin College, Northeast Forestry University, Harbin, 150040, Heilongjiang, People's Republic of China.
Bowen ZhangSchool of Life Science, Northeast Forestry University, Harbin, 150040, Heilongjiang, People's Republic of China.
Fengqianrui ChenAulin College, Northeast Forestry University, Harbin, 150040, Heilongjiang, People's Republic of China.
Kairui SuSchool of Life Science, Northeast Forestry University, Harbin, 150040, Heilongjiang, People's Republic of China.
Yulong ZhangSchool of Life Science, Northeast Forestry University, Harbin, 150040, Heilongjiang, People's Republic of China.
Yi DongAulin College, Northeast Forestry University, Harbin, 150040, Heilongjiang, People's Republic of China.
Zhihao WangAulin College, Northeast Forestry University, Harbin, 150040, Heilongjiang, People's Republic of China.
Hongda FuNEFU-China iGEM Team, Northeast Forestry University, Harbin, 150040, Heilongjiang, People's Republic of China.
Guangchao SuiSchool of Life Science, Northeast Forestry University, Harbin, 150040, Heilongjiang, People's Republic of China. gcsui@nefu.edu.cn.
Pengchao WangSchool of Life Science, Northeast Forestry University, Harbin, 150040, Heilongjiang, People's Republic of China. pengchaowang1990@163.com.ORCID http://orcid.org/0000-0001-8268-3500
Northeast Forestry University · CNEducation Department of Heilongjiang Province · CN

Funding

National Natural Science Foundation of China 31900064Natural Science Foundation of Heilongjiang LH2019C012
6 · The paper itself

Abstract

Hydroxy-mandelic acid (HMA) is widely applied in pharmaceuticals, food and cosmetics. In this study, we aimed to develop an allosteric transcription factors (aTFs) based biosensor for HMA. PobR, an aTF for HMA analog 4-hydroxybenzoic acid, was used to alter its selectivity and create novel aTFs responsive to HMA by directed evolution. We established a PobR mutant library with a capacity of 550,000 mutants using error-prone PCR and Megawhop PCR. Through our screening, two mutants were obtained with responsiveness to HMA. Analysis of each missense mutation indicating residues 122-126 were involved in its PobR ligand specificity. These results showed the effectiveness of directed evolution in switching the ligand specificity of a biosensor and improving HMA production.

Indexed as

Biosensing TechniquesTranscription FactorsBacterial ProteinsLigandsMandelic Acids4-hydroxymandelic acidBacterial ProteinsLigandsMandelic AcidsTranscription FactorsDirected evolutionHydroxy-mandelic acidLigand specificityPobR

Identifiers

PMID35501522
OpenAlexW4225383701

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.