Evidence map›Paper›PMID 35501424›Full record

ArticleNPJ biofilms and microbiomes2022

GGDEF domain as spatial on-switch for a phosphodiesterase by interaction with landmark protein HubP.

Tim Rick, Vanessa Kreiling, Alexander Höing, Svenja Fiedler, Timo Glatter, Wieland Steinchen, Georg Hochberg, Heike Bähre, Roland Seifert, Gert Bange and 3 more

Open access · goldAbstract read
In one paragraph

Article in NPJ biofilms and microbiomes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 19 citations in OpenAlex.

  1. The polar landscape of bacterial pathogens and predators.Current opinion in microbiology · 2026
    Review
  2. Article
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  5. Epigenetic cellular memory inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Role of a single MCP in evolutionary adaptation ofApplied and environmental microbiology · 2025
    Article
  7. Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
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  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Tim Rick *Justus-Liebig-Universität, Department of Microbiology and Molecular Biology, 35392, Giessen, Germany. tim.rick@mikro.bio.uni-giessen.de.
Vanessa Kreiling *Justus-Liebig-Universität, Department of Microbiology and Molecular Biology, 35392, Giessen, Germany.
Alexander HöingDepartment of Molecular Biology II, Centre for Medical Biotechnology (ZMB), University of Duisburg-Essen, 45141, Essen, Germany.ORCID 0000-0002-3762-4832
Svenja FiedlerCenter for Synthetic Microbiology (SYNMIKRO), 35043, Marburg, Germany.ORCID 0000-0002-5507-4344
Timo GlatterMax Planck Institute for Terrestrial Microbiology, Facility for Mass Spectrometry and Proteomics, 35043, Marburg, Germany.
Wieland SteinchenCenter for Synthetic Microbiology (SYNMIKRO), 35043, Marburg, Germany.
Georg HochbergPhilipps-Universität Marburg, Department of Chemistry, 35043, Marburg, Germany.
Heike BähreMedizinische Hochschule Hannover, ZFA Metabolomics, 30625, Hannover, Germany.
Roland SeifertMedizinische Hochschule Hannover, ZFA Metabolomics, 30625, Hannover, Germany.
Gert BangeCenter for Synthetic Microbiology (SYNMIKRO), 35043, Marburg, Germany.
Shirley K KnauerDepartment of Molecular Biology II, Centre for Medical Biotechnology (ZMB), University of Duisburg-Essen, 45141, Essen, Germany.
Peter L GraumannCenter for Synthetic Microbiology (SYNMIKRO), 35043, Marburg, Germany.
Kai M ThormannJustus-Liebig-Universität, Department of Microbiology and Molecular Biology, 35392, Giessen, Germany. kai.thormann@mikro.bio.uni-giessen.de.ORCID 0000-0001-7292-4884
Philipps University of Marburg · DEJustus-Liebig-Universität Gießen · DEMedizinische Hochschule Hannover · DEUniversity of Duisburg-Essen · DEMax Planck Institute for Terrestrial Microbiology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In bacteria, the monopolar localization of enzymes and protein complexes can result in a bimodal distribution of enzyme activity between the dividing cells and heterogeneity of cellular behaviors. In Shewanella putrefaciens, the multidomain hybrid diguanylate cyclase/phosphodiesterase PdeB, which degrades the secondary messenger c-di-GMP, is located at the flagellated cell pole. Here, we show that direct interaction between the inactive diguanylate cyclase (GGDEF) domain of PdeB and the FimV domain of the polar landmark protein HubP is crucial for full function of PdeB as a phosphodiesterase. Thus, the GGDEF domain serves as a spatially controlled on-switch that effectively restricts PdeBs activity to the flagellated cell pole. PdeB regulates abundance and activity of at least two crucial surface-interaction factors, the BpfA surface-adhesion protein and the MSHA type IV pilus. The heterogeneity in c-di-GMP concentrations, generated by differences in abundance and timing of polar appearance of PdeB, orchestrates the population behavior with respect to cell-surface interaction and environmental spreading.

Indexed as

Bacterial ProteinsPhosphoric Diester HydrolasesFimbriae, BacterialBacterial ProteinsPhosphoric Diester Hydrolases

Identifiers

PMID35501424
PMCPMC9061725
OpenAlexW4225269102

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.