Evidence map›Paper›PMID 35499742›Full record

ArticleBiodegradation2022

Degradation of 2,4-dichlorophenoxyacetic acid (2,4-D) and 2,4,5-trichlorophenoxyacetic acid (2,4,5-T) by fungi originating from Vietnam.

Thi Lan Anh Nguyen, Anh Thi Ngoc Dao, Ha Thi Cam Dang, Jacco Koekkoek, Abraham Brouwer, Tjalf E de Boer, Rob J M van Spanning

Open access · hybridAbstract read
In one paragraph

Article in Biodegradation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Thi Lan Anh Nguyen *Department of Molecular Cell Biology, Vrije Universiteit, De Boelelaan 1108, 1081 HZ, Amsterdam, The Netherlands. l.a.nguyenthi@vu.nl.ORCID http://orcid.org/0000-0001-6212-4613
Anh Thi Ngoc Dao *Institute of Biotechnology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam.
Ha Thi Cam DangInstitute of Biotechnology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam.
Jacco KoekkoekDepartment of Environment and Health, Vrije Universiteit, De Boelelaan 1108, 1081 HZ, Amsterdam, The Netherlands.
Abraham BrouwerBioDetection Systems, Science Park 406, 1098 XH, Amsterdam, The Netherlands.
Tjalf E de BoerMicroLife Solutions, Science Park 406, 1098 XH, Amsterdam, The Netherlands.
Rob J M van SpanningDepartment of Molecular Cell Biology, Vrije Universiteit, De Boelelaan 1108, 1081 HZ, Amsterdam, The Netherlands.
Vietnam Academy of Science and Technology · VNVrije Universiteit Amsterdam · NLBioDetection Systems (Netherlands) · NL

Funding

Ministry of Science and Technology code 826/QD-BKHCN
6 · The paper itself

Abstract

Three different fungi were tested for their ability to degrade 2,4-dichlorophenoxyacetic acid and 2,4,5-trichlorophenoxyacetic acid and for the role of laccases and cytochromes P450-type in this process. We studied a white-rot fungus Rigidoporus sp. FMD21, which has a high laccase activity, for its efficiency to degrade these herbicides. A positive correlation was found between its laccase activity and the corresponding herbicide degradation rate. Even more, the doubling of the enzyme activity in this phase corresponded with a doubling of the herbicide degradation rate. It is, therefore, tempting to speculate that laccase is the most dominant enzyme in the degradation of 2,4-D and 2,4,5-T under these conditions. In addition, it was shown that Rigidoporus sp. FMD21 partly relies on cytochromes P450-type for the breakdown of the herbicides as well. Two filamentous fungi were isolated from soil contaminated with herbicides and dioxins located at Bien Hoa airbase. They belong to genera Fusarium and Verticillium of the phylum Ascomycota as judged by their 18S rRNA gene sequences. Both isolated fungi were able to degrade the herbicides but with different rates. Their laccase activity, however, was very low and did not correlate with the rate of breakdown of the herbicides. These data indicate that the white-rot fungus most likely synthesizes laccase and cytochromes P450-type for the breakdown of the herbicides, while the types of enzyme used for the breakdown of the herbicides by the two Ascomycota remain unclear.

Indexed as

2,4-Dichlorophenoxyacetic AcidHerbicides2,4,5-Trichlorophenoxyacetic AcidBiodegradation, EnvironmentalCytochromesFungiLaccaseVietnam2,4,5-Trichlorophenoxyacetic Acid2,4-Dichlorophenoxyacetic AcidCytochromesHerbicidesLaccase2,4,5-Trichlorophenoxyacetic acid2,4-Dichlorophenoxyacetic acidBiodegradationCYP inhibitorsLaccaseRigidoporus

Identifiers

PMID35499742
PMCPMC9106640
OpenAlexW4225271021

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.