Evidence map›Paper›PMID 35494173›Full record

ArticleVirus evolution2022

Human land use impacts viral diversity and abundance in a New Zealand river.

Rebecca French, Justine Charon, Callum Le Lay, Chris Muller, Edward C Holmes

Abstract read
In one paragraph

Article in Virus evolution, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Viral Diversity of Coastal Restinga Soils From Southern Brazil.Environmental microbiology reports · 2026
    Article
  3. Article
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  11. Article
  12. The RNA virosphere: How big and diverse is it?Environmental microbiology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Rebecca FrenchSydney Institute for Infectious Diseases, Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead NSW 2145, Australia.
Justine CharonSydney Institute for Infectious Diseases, Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead NSW 2145, Australia.
Callum Le LaySydney Institute for Infectious Diseases, Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead NSW 2145, Australia.
Chris MullerWildbase, School of Veterinary Sciences, Massey University, Palmerston North 4442, New Zealand.ORCID https://orcid.org/0000-0002-7330-1686
Edward C HolmesSydney Institute for Infectious Diseases, Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead NSW 2145, Australia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although water-borne viruses have important implications for the health of humans and other animals, little is known about the impact of human land use on viral diversity and evolution in water systems such as rivers. We used metatranscriptomic sequencing to compare the diversity and abundance of viruses at sampling sites along a single river in New Zealand that differed in human land-use impacts, ranging from pristine to urban. From this, we identified 504 putative virus species, of which 97 per cent were novel. Many of the novel viruses were highly divergent and likely included a new subfamily within the

Indexed as

freshwatermetagenomicsmetatranscriptomicsParvoviridaeviral ecology

Identifiers

PMID35494173
PMCPMC9049113

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.