Evidence map›Paper›PMID 35491653›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2022

Association of TP53 and CDKN2A Mutation Profile with Tumor Mutation Burden in Head and Neck Cancer.

Alexander Y Deneka, Yasmine Baca, Ilya G Serebriiskii, Emmanuelle Nicolas, Mitchell I Parker, Theodore T Nguyen, Joanne Xiu, W Michael Korn, Michael J Demeure, Trisha Wise-Draper and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed, 1 pooled it
8.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 1 synthesis or guideline pooled it, 85 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Alexander Y DenekaMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania.ORCID 0000-0003-2448-5156
Yasmine BacaCaris Life Sciences, Phoenix, Arizona.
Ilya G SerebriiskiiMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania.ORCID 0000-0003-0470-9490
Emmanuelle NicolasMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania.ORCID 0000-0002-0368-3519
Mitchell I ParkerMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania.ORCID 0000-0003-1223-3904
Theodore T NguyenMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania.
Joanne XiuCaris Life Sciences, Phoenix, Arizona.
W Michael KornCaris Life Sciences, Phoenix, Arizona.ORCID 0000-0002-0124-6841
Michael J DemeurePrecision Medicine Program, Hoag Family Cancer Institute, Newport Beach, California.ORCID 0000-0001-8585-124X
Trisha Wise-DraperDepartment of Internal Medicine, Division of Hematology/Oncology, University of Cincinnati, Cincinnati, Ohio.ORCID 0000-0002-7279-4028
Ammar SukariDepartment of Oncology, Karmanos Cancer Institute/Wayne State University, Detroit, Michigan.
Barbara BurtnessSection of Medical Oncology, Department of Internal Medicine, and Yale Cancer Center, Yale University School of Medicine, New Haven, Connecticut.
Erica A GolemisMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania.ORCID 0000-0003-3618-3673
Fox Chase Cancer Center · USCaris Life Sciences (United States) · USHoag Memorial Hospital Presbyterian · USUniversity of Cincinnati · USWayne State University · USYale Cancer Center · US

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Dietmar J Kappes · 1985 to 2026
$138.8M
Yale Head and Neck Cancer SPORE: Overcoming Treatment Resistance in Head and Neck CancerP50DE030707 · NIDCR · YALE UNIVERSITY · PI BURTNESS, BARBARA · 2020 to 2024
$11.8M
Creating a Unified RAS Structural Nomenclature to Compare the Impact of Oncogenic Mutations on KRAS, NRAS, and HRASF30GM142263 · NIGMS · DREXEL UNIVERSITY · PI PARKER, MITCHELL ISAAC · 2021 to 2024
$191k
NCI NIH HHS P30 CA006927NIDCR NIH HHS P50 DE030707NIGMS NIH HHS F30 GM142263
6 · The paper itself

Abstract

purposeHead and neck squamous cell carcinoma (HNSCC) is a frequently devastating cancer that affects more than a half million people annually worldwide. Although some cases arise from infection with human papillomavirus (HPV), HPV-negative HNSCC is more common, and associated with worse outcome. Advanced HPV-negative HNSCC may be treated with surgery, chemoradiation, targeted therapy, or immune checkpoint inhibition (ICI). There is considerable need for predictive biomarkers for these treatments. Defects in DNA repair capacity and loss of cell-cycle checkpoints sensitize tumors to cytotoxic therapies, and can contribute to phenotypes such as elevated tumor mutation burden (TMB), associated with response to ICI. Mutation of the tumor suppressors and checkpoint mediators TP53 and CDKN2A is common in HPV-negative HNSCC. EXPERIMENTAL

designTo gain insight into the relation of the interaction of TP53 and CDKN2A mutations with TMB in HNSCC, we have analyzed genomic data from 1,669 HPV-negative HNSCC tumors with multiple criteria proposed for assessing the damaging effect of TP53 mutations.

resultsData analysis established the TP53 and CDKN2A mutation profiles in specific anatomic subsites and suggested that specific categories of TP53 mutations are more likely to associate with CDKN2A mutation or high TMB based on tumor subsite. Intriguingly, the pattern of hotspot mutations in TP53 differed depending on the presence or absence of a cooccurring CDKN2A mutation.

conclusionsThese data emphasize the role of tumor subsite in evaluation of mutational profiles in HNSCC, and link defects in TP53 and CDKN2A to elevated TMB levels in some tumor subgroups.

Indexed as

Carcinoma, Squamous CellHead and Neck NeoplasmsPapillomavirus InfectionsBiomarkers, TumorCyclin-Dependent Kinase Inhibitor p16HumansMutationSquamous Cell Carcinoma of Head and NeckTumor Suppressor Protein p53Biomarkers, TumorCDKN2A protein, humanCyclin-Dependent Kinase Inhibitor p16TP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID35491653
PMCPMC9186806
OpenAlexW4225270205

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.