Evidence map›Paper›PMID 35490297›Full record

ArticleBiophysical journal2022

Charge and redox states modulate granulin-TDP-43 coacervation toward phase separation or aggregation.

Anukool A Bhopatkar, Shailendra Dhakal, Hannah G Abernathy, Sarah E Morgan, Vijayaraghavan Rangachari

Open access · greenAbstract read
In one paragraph

Article in Biophysical journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Reversible Redox-Responsive Peptide Condensates With RNA.Chembiochem : a European journal of chemical biology · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Biophysics of biomolecular condensates.Biophysical journal · 2023
    Article
  11. Article
  12. Protein conformation and biomolecular condensates.Current research in structural biology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Anukool A BhopatkarDepartment of Chemistry and Biochemistry, School of Mathematics and Natural Sciences, University of Southern Mississippi, Hattiesburg, Mississippi.
Shailendra DhakalDepartment of Chemistry and Biochemistry, School of Mathematics and Natural Sciences, University of Southern Mississippi, Hattiesburg, Mississippi.
Hannah G AbernathySchool of Polymer Science and Engineering, University of Southern Mississippi, Hattiesburg, Mississippi.
Sarah E MorganSchool of Polymer Science and Engineering, University of Southern Mississippi, Hattiesburg, Mississippi.
Vijayaraghavan RangachariDepartment of Chemistry and Biochemistry, School of Mathematics and Natural Sciences, University of Southern Mississippi, Hattiesburg, Mississippi; Center for Molecular and Cellular Biosciences, University of Southern Mississippi, Hattiesburg, Mississippi. Electronic address: Vijay.rangachari@usm.edu.
University of Southern Mississippi · US

Funding

Training and Mentoring Core P20GM103476 · NIGMS · UNIVERSITY OF SOUTHERN MISSISSIPPI · PI MICHAEL R GARRETT · 2012 to 2026
$60.2M
TOUGALOO PROTEOMICSP20RR016476 · NCRR · UNIVERSITY OF SOUTHERN MISSISSIPPI · PI MAO, JINGHE · 2001 to 2011
$30.4M
Role of Lipid-derived Oligomer Strains in AD PhenotypesR56AG062292 · NIA · UNIVERSITY OF SOUTHERN MISSISSIPPI · PI RANGACHARI, VIJAY · 2018 to 2018
$671k
NCRR NIH HHS P20 RR016476NIA NIH HHS R56 AG062292NIGMS NIH HHS P20 GM103476
6 · The paper itself

Abstract

Cytoplasmic inclusions containing aberrant proteolytic fragments of TDP-43 are associated with frontotemporal lobar degeneration (FTLD) and other related pathologies. In FTLD, TDP-43 is translocated into the cytoplasm and proteolytically cleaved to generate a prion-like domain (PrLD) containing C-terminal fragments (C25 and C35) that form toxic inclusions. Under stress, TDP-43 partitions into membraneless organelles called stress granules (SGs) by coacervating with RNA and other proteins. To study the factors that influence the dynamics between these cytoplasmic foci, we investigated the effects of cysteine-rich granulins (GRNs 1-7), which are the proteolytic products of progranulin, a protein implicated in FTLD, on TDP-43. We show that extracellular GRNs, typically generated during inflammation, internalize and colocalize with PrLD as puncta in the cytoplasm of neuroblastoma cells but show less likelihood of their presence in SGs. In addition, we show GRNs and PrLD coacervate to undergo liquid-liquid phase separation (LLPS) or form gel- or solid-like aggregates. Using charge patterning and conserved cysteines among the wild-type GRNs as guides, along with specifically engineered mutants, we discover that the negative charges on GRNs drive LLPS while the positive charges and the redox state of cysteines modulate these phase transitions. Furthermore, RNA and GRNs compete and expel one another from PrLD condensates, providing a basis for GRN's absence in SGs. Together, the results help uncover potential modulatory mechanisms by which extracellular GRNs, formed during chronic inflammatory conditions, could internalize and modulate cytoplasmic TDP-43 inclusions in proteinopathies.

Indexed as

Amyotrophic Lateral SclerosisDNA-Binding ProteinsFrontotemporal Lobar DegenerationGranulinsHumansOxidation-ReductionProtein Aggregation, PathologicalRNADNA-Binding ProteinsGranulinsRNATARDBP protein, human

Identifiers

PMID35490297
PMCPMC9247478
OpenAlexW4225136866

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.