Evidence map›Paper›PMID 35486731›Full record

ArticleScience advances2022

Genome evolution of a nonparasitic secondary heterotroph, the diatom

Ryoma Kamikawa, Takako Mochizuki, Mika Sakamoto, Yasuhiro Tanizawa, Takuro Nakayama, Ryo Onuma, Ugo Cenci, Daniel Moog, Samuel Speak, Krisztina Sarkozi and 19 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Diatom triacylglycerol metabolism: from carbon fixation to lipid droplet degradation.Biological reviews of the Cambridge Philosophical Society · 2025
    Review
  6. Article
  7. Article
  8. Genetic engineering in diatoms: advances and prospects.The Plant journal : for cell and molecular biology · 2025
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 11 institutions in 5 countries.

Ryoma KamikawaGraduate School of Agriculture, Kyoto University, Kyoto 606-8502, Japan.ORCID 0000-0003-2648-8107
Takako MochizukiDepartment of Informatics, National Institute of Genetics, Research Organization of Information and Systems, Shizuoka 411-8540, Japan.ORCID 0000-0002-2044-0682
Mika SakamotoDepartment of Informatics, National Institute of Genetics, Research Organization of Information and Systems, Shizuoka 411-8540, Japan.ORCID 0000-0003-4636-6959
Yasuhiro TanizawaDepartment of Informatics, National Institute of Genetics, Research Organization of Information and Systems, Shizuoka 411-8540, Japan.ORCID 0000-0002-6294-3309
Takuro NakayamaGraduate School of Life Sciences, Tohoku University, Sendai 980-8578, Japan.ORCID 0000-0001-5135-0156
Ryo OnumaDepartment of Gene Function and Phenomics, National Institute of Genetics, Shizuoka 411-8540, Japan.ORCID 0000-0003-1592-0814
Ugo CenciUniversité de Lille, CNRS, UMR 8576 - UGSF - Unité de Glycobiologie Structurale et Fonctionnelle, F-59000 Lille, France.ORCID 0000-0001-9725-9833
Daniel MoogLaboratory for Cell Biology, Philipps University Marburg, Karl-von-Frisch-Str. 8.
Samuel SpeakSchool of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, UK.ORCID 0000-0002-4207-7562
Krisztina SarkoziSchool of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, UK.
Andrew ToselandSchool of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, UK.ORCID 0000-0002-6513-956X
Cock van OosterhoutSchool of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, UK.ORCID 0000-0002-5653-738X
Kaori OyamaGraduate School of Humanities and Sciences, Ochanomizu University, Tokyo, Japan.
Misako KatoGraduate School of Humanities and Sciences, Ochanomizu University, Tokyo, Japan.
Keitaro KumeDepartment of Clinical Medicine, Faculty of Medicine, University of Tsukuba, Ibaraki 305-8572, Japan.ORCID 0000-0003-4937-345X
Motoki KayamaGraduate School of Human and Environmental Studies, Kyoto University, Kyoto 606-8501, Japan.ORCID 0000-0002-5119-6811
Tomonori AzumaGraduate School of Human and Environmental Studies, Kyoto University, Kyoto 606-8501, Japan.
Ken-Ichiro IshiiGraduate School of Human and Environmental Studies, Kyoto University, Kyoto 606-8501, Japan.
Hideaki MiyashitaGraduate School of Human and Environmental Studies, Kyoto University, Kyoto 606-8501, Japan.
Bernard HenrissatArchitecture et Fonction des Macromolécules Biologiques (AFMB), CNRS, Université Aix-Marseille, 163 Avenue de Luminy, 13288 Marseille, France.ORCID 0000-0002-3434-8588
Vincent LombardArchitecture et Fonction des Macromolécules Biologiques (AFMB), CNRS, Université Aix-Marseille, 163 Avenue de Luminy, 13288 Marseille, France.ORCID 0000-0002-9684-7067
Joe WinThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK.ORCID 0000-0002-9851-2404
Sophien KamounThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK.ORCID 0000-0002-0290-0315
Yuichiro KashiyamaGraduate School of Engineering, Fukui University of Technology, Fukui, Japan.ORCID 0000-0001-7337-2209
Shigeki MayamaAdvanced Support Center for Science Teachers, Tokyo Gakugei University, Koganei, Tokyo, Japan.ORCID 0000-0003-1936-1941
Shin-Ya MiyagishimaDepartment of Gene Function and Phenomics, National Institute of Genetics, Shizuoka 411-8540, Japan.
Goro TanifujiDepartment of Zoology, National Museum of Nature and Science, Tsukuba 305-0005, Japan.
Thomas MockSchool of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, UK.ORCID 0000-0001-9604-0362
Yasukazu NakamuraDepartment of Informatics, National Institute of Genetics, Research Organization of Information and Systems, Shizuoka 411-8540, Japan.ORCID 0000-0002-6782-5715
University of East Anglia · GBNational Institute of Genetics · JPKyoto University · JPCentre National de la Recherche Scientifique · FROchanomizu University · JPFukui University of Technology · JPNational Museum of Nature and Science · JPPhilipps University of Marburg · DETohoku University · JPTokyo Gakugei University · JPUniversity of Tsukuba · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Secondary loss of photosynthesis is observed across almost all plastid-bearing branches of the eukaryotic tree of life. However, genome-based insights into the transition from a phototroph into a secondary heterotroph have so far only been revealed for parasitic species. Free-living organisms can yield unique insights into the evolutionary consequence of the loss of photosynthesis, as the parasitic lifestyle requires specific adaptations to host environments. Here, we report on the diploid genome of the free-living diatom

Identifiers

PMID35486731
PMCPMC9054022
OpenAlexW4225256033

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.