Evidence map›Paper›PMID 35484194›Full record

ArticleNPJ precision oncology2022

DNA-based copy number analysis confirms genomic evolution of PDX models.

Anna C H Hoge, Michal Getz, Anat Zimmer, Minjeong Ko, Linoy Raz, Rameen Beroukhim, Todd R Golub, Gavin Ha, Uri Ben-David

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in NPJ precision oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Anna C H Hoge *Public Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Michal Getz *Department of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
Anat ZimmerPublic Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Minjeong KoPublic Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Linoy RazDepartment of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
Rameen BeroukhimBroad Institute of Harvard and MIT, Cambridge, MA, USA.
Todd R GolubBroad Institute of Harvard and MIT, Cambridge, MA, USA.
Gavin HaPublic Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA. gha@fredhutch.org.ORCID http://orcid.org/0000-0001-7578-7272
Uri Ben-DavidDepartment of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel. ubendavid@tauex.tau.ac.il.ORCID http://orcid.org/0000-0001-7098-2378
Fred Hutch Cancer Center · USTel Aviv University · ILBroad Institute · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
Genetic evolution of glioblastomas during radiation and temozolomide therapyR01CA188228 · NCI · DANA-FARBER CANCER INST · PI BEROUKHIM, RAMEEN, CHAKRAVARTI, ARNAB · 2015 to 2025
$6.9M
High-Performance Compute Cluster for Comprehensive Cancer and Infectious Diseases ResearchS10OD028685 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BRADLEY, PHILIP · 2020 to 2020
$2.0M
Identifying driver non-coding alterations in metastatic prostate cancer from tumor and cell-free DNAK22CA237746 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HA, GAVIN · 2020 to 2022
$568k
NCI NIH HHS K22 CA237746NCI NIH HHS P30 CA015704NCI NIH HHS R01 CA188228NIH HHS S10 OD028685
6 · The paper itself

Abstract

Genomic evolution of patient-derived xenografts (PDXs) may lead to their gradual divergence away of their tumors of origin. We previously reported the genomic evolution of the copy number (CN) landscapes of PDXs during their engraftment and passaging

Identifiers

PMID35484194
PMCPMC9050710
OpenAlexW4225422943

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.