Evidence map›Paper›PMID 35480627›Full record

ArticleCell reports. Medicine2022

Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA.

Rebecca Earnest, Rockib Uddin, Nicholas Matluk, Nicholas Renzette, Sarah E Turbett, Katherine J Siddle, Christine Loreth, Gordon Adams, Christopher H Tomkins-Tinch, Mary E Petrone and 41 more

Abstract read
In one paragraph

Article in Cell reports. Medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 130 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
130citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

130 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Understanding patterns of variant emergence and spread in an ongoing epidemic.medRxiv : the preprint server for health sciences · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Dynamics of SARS-CoV-2 variants in southwest Ohio municipal wastewater.Environmental science : water research & technology · 2025
    Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

70 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

51 authors.

Rebecca EarnestDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA. Electronic address: rebecca.earnest@yale.edu.
Rockib UddinDivision of Infectious Diseases, Massachusetts General Hospital, Boston, MA 02114, USA.
Nicholas MatlukMaine Center for Disease Control and Prevention, Augusta, ME 04333, USA; Health and Environmental Testing Laboratory, Augusta, ME 04333, USA.
Nicholas RenzetteThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, USA.
Sarah E TurbettDivision of Infectious Diseases, Massachusetts General Hospital, Boston, MA 02114, USA.
Katherine J SiddleBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Christine LorethBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Gordon AdamsBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Christopher H Tomkins-TinchBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Mary E PetroneDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA.
Jessica E RothmanDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA.
Mallery I BrebanDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA.
Robert Tobias KochDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA.
Kendall BilligDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA.
Joseph R FauverDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA.
Chantal B F VogelsDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA.
Kaya BilguvarYale Center for Genome Analysis, Yale University, New Haven, CT 06510, USA; Departments of Neurosurgery and Genetics, Yale School of Medicine, New Haven, CT 06510, USA; Department of Medical Genetics, Acibadem University School of Medicine, Istanbul, Turkey.
Bony De KumarYale Center for Genome Analysis, Yale University, New Haven, CT 06510, USA.
Marie L LandryDepartments of Laboratory Medicine and Medicine, Yale University School of Medicine, New Haven, CT 06510, USA.
David R PeaperDepartments of Laboratory Medicine and Medicine, Yale University School of Medicine, New Haven, CT 06510, USA.
Kevin KellyThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, USA.
Greg OmerzaThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, USA.
Heather GrieserMaine Center for Disease Control and Prevention, Augusta, ME 04333, USA; Health and Environmental Testing Laboratory, Augusta, ME 04333, USA.
Sim MeakMaine Center for Disease Control and Prevention, Augusta, ME 04333, USA; Health and Environmental Testing Laboratory, Augusta, ME 04333, USA.
John MarthaMaine Center for Disease Control and Prevention, Augusta, ME 04333, USA; Health and Environmental Testing Laboratory, Augusta, ME 04333, USA.
Hannah B DeweyThe Jackson Laboratory, Bar Harbor, ME 04609, USA.
Susan KalesThe Jackson Laboratory, Bar Harbor, ME 04609, USA.
Daniel BerenzyThe Jackson Laboratory, Bar Harbor, ME 04609, USA.
Kristin Carpenter-AzevedoRhode Island Department of Health, State Health Laboratories, Providence, RI 02904, USA.
Ewa KingRhode Island Department of Health, State Health Laboratories, Providence, RI 02904, USA.
Richard C HuardRhode Island Department of Health, State Health Laboratories, Providence, RI 02904, USA.
Vlad NovitskyDivision of Infectious Diseases, Brown University Alpert Medical School, Providence, RI 02906, USA.
Mark HowisonResearch Improving People's Lives, Providence, RI 02903, USA.
Josephine DarpolorDivision of Infectious Diseases, Brown University Alpert Medical School, Providence, RI 02906, USA.
Akarsh ManneDivision of Infectious Diseases, Brown University Alpert Medical School, Providence, RI 02906, USA.
Rami KantorDivision of Infectious Diseases, Brown University Alpert Medical School, Providence, RI 02906, USA.
Sandra C SmoleMassachusetts Department of Public Health, Boston, MA 02130, USA.
Catherine M BrownMassachusetts Department of Public Health, Boston, MA 02130, USA.
Timelia FinkMassachusetts Department of Public Health, Boston, MA 02130, USA.
Andrew S LangMassachusetts Department of Public Health, Boston, MA 02130, USA.
Glen R GallagherMassachusetts Department of Public Health, Boston, MA 02130, USA.
Virginia E PitzerDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA.
Pardis C SabetiBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Stacey GabrielBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Bronwyn L MacInnisBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
New England Variant Investigation Team
Ryan TewheyDepartment of Medical Genetics, Acibadem University School of Medicine, Istanbul, Turkey; Graduate School of Biomedical Sciences, Tufts University School of Medicine, Boston, MA 02111, USA; Graduate School of Biomedical Sciences and Engineering, University of Maine, Orono, ME 04469, USA.
Mark D AdamsThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, USA.
Daniel J ParkBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Jacob E LemieuxDivision of Infectious Diseases, Massachusetts General Hospital, Boston, MA 02114, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Nathan D GrubaughDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA; Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06510, USA. Electronic address: nathan.grubaugh@yale.edu.

Funding

NRSA Training CoreTL1TR001864 · NCATS · YALE UNIVERSITY · PI CANTLEY, LLOYD G, EDELMAN, E. JENNIFER · 2016 to 2025
$9.9M
NCATS NIH HHS TL1 TR001864
6 · The paper itself

Abstract

The SARS-CoV-2 Delta variant rose to dominance in mid-2021, likely propelled by an estimated 40%-80% increased transmissibility over Alpha. To investigate if this ostensible difference in transmissibility is uniform across populations, we partner with public health programs from all six states in New England in the United States. We compare logistic growth rates during each variant's respective emergence period, finding that Delta emerged 1.37-2.63 times faster than Alpha (range across states). We compute variant-specific effective reproductive numbers, estimating that Delta is 63%-167% more transmissible than Alpha (range across states). Finally, we estimate that Delta infections generate on average 6.2 (95% CI 3.1-10.9) times more viral RNA copies per milliliter than Alpha infections during their respective emergence. Overall, our evidence suggests that Delta's enhanced transmissibility can be attributed to its innate ability to increase infectiousness, but its epidemiological dynamics may vary depending on underlying population attributes and sequencing data availability.

Indexed as

COVID-19SARS-CoV-2HumansNew EnglandPublic HealthCOVID-19genomic epidemiologySARS-CoV-2transmissibilityvariant of concernviral emergenceviral sequencingVOC

Identifiers

PMID35480627
PMCPMC8913280

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.