Evidence map›Paper›PMID 35480325›Full record

ArticleFrontiers in genetics2022

MAPPER: An Open-Source, High-Dimensional Image Analysis Pipeline Unmasks Differential Regulation of

Nilay Kumar, Francisco J Huizar, Keity J Farfán-Pira, Pavel A Brodskiy, Dharsan K Soundarrajan, Marcos Nahmad, Jeremiah J Zartman

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Frontiers in genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. GαCell communication and signaling : CCS · 2025
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Nilay KumarDepartment of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, IN, United States.
Francisco J HuizarDepartment of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, IN, United States.
Keity J Farfán-PiraDepartment of Physiology, Biophysics, and Neurosciences, Center for Research and Advanced Studies of the National Polytechnical Institute (Cinvestav), Mexico City, Mexico.
Pavel A BrodskiyDepartment of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, IN, United States.
Dharsan K SoundarrajanDepartment of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, IN, United States.
Marcos NahmadDepartment of Physiology, Biophysics, and Neurosciences, Center for Research and Advanced Studies of the National Polytechnical Institute (Cinvestav), Mexico City, Mexico.
Jeremiah J ZartmanDepartment of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, IN, United States.
University of Notre Dame · USCenter for Research and Advanced Studies of the National Polytechnic Institute · MX

Funding

Regulation and function of multicellular calcium signaling in epithelial growth and regenerationR35GM124935 · NIGMS · UNIVERSITY OF NOTRE DAME · PI ZARTMAN, JEREMIAH JAMES · 2017 to 2021
$1.9M
NIGMS NIH HHS R35 GM124935
6 · The paper itself

Abstract

Phenomics requires quantification of large volumes of image data, necessitating high throughput image processing approaches. Existing image processing pipelines for

Indexed as

complementary genomic toolsdevelopmental biologyfeature selectiongenotype-to-phenotypehigh-dimensionalmachine and deep learningstatistical approaches for phenomicssystems bioengineering

Identifiers

PMID35480325
PMCPMC9035675
OpenAlexW4223540624

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.