Evidence map›Paper›PMID 35478353›Full record

ArticleJournal of computational chemistry2022

Comparison of approximate intermolecular potentials for ab initio fragment calculations on medium sized N-heterocycles.

Bónis Barcza, Ádám B Szirmai, Katalin J Szántó, Attila Tajti, Péter G Szalay

Abstract read
In one paragraph

Article in Journal of computational chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Performance of Multilevel Methods for Excited States.The journal of physical chemistry. A · 2022
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Bónis BarczaInstitute of Chemistry, Laboratory of Theoretical Chemistry, ELTE Eötvös Loránd University, Budapest, Hungary.ORCID https://orcid.org/0000-0002-7021-7665
Ádám B SzirmaiInstitute of Chemistry, Laboratory of Theoretical Chemistry, ELTE Eötvös Loránd University, Budapest, Hungary.ORCID https://orcid.org/0000-0003-2272-5574
Katalin J SzántóInstitute of Chemistry, Laboratory of Theoretical Chemistry, ELTE Eötvös Loránd University, Budapest, Hungary.ORCID https://orcid.org/0000-0003-4767-0987
Attila TajtiInstitute of Chemistry, Laboratory of Theoretical Chemistry, ELTE Eötvös Loránd University, Budapest, Hungary.ORCID https://orcid.org/0000-0002-7974-6141
Péter G SzalayInstitute of Chemistry, Laboratory of Theoretical Chemistry, ELTE Eötvös Loránd University, Budapest, Hungary.ORCID https://orcid.org/0000-0003-1885-3557

Funding

Nemzeti Kutatási Fejlesztési és Innovációs Hivatal 124018
6 · The paper itself

Abstract

The ground state intermolecular potential of bimolecular complexes of N-heterocycles is analyzed for the impact of individual terms in the interaction energy as provided by various, conceptually different theories. Novel combinations with several formulations of the electrostatic, Pauli repulsion, and dispersion contributions are tested at both short- and long-distance sides of the potential energy surface, for various alignments of the pyrrole dimer as well as the cytosine-uracil complex. The integration of a DFT/CCSD density embedding scheme, with dispersion terms from the effective fragment potential (EFP) method is found to provide good agreement with a reference CCSD(T) potential overall; simultaneously, a quantum mechanics/molecular mechanics approach using CHELPG atomic point charges for the electrostatic interaction, augmented by EFP dispersion and Pauli repulsion, comes also close to the reference result. Both schemes have the advantage of not relying on predefined force fields; rather, the interaction parameters can be determined for the system under study, thus being excellent candidates for ab initio modeling.

Indexed as

dispersioneffective fragment potentialembeddingintermolecular interactionsPauli repulsionQM/MM

Identifiers

PMID35478353
PMCPMC9321956

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.