Evidence map›Paper›PMID 35477024›Full record

ArticleCell reports2022

Inter-domain communication in SARS-CoV-2 spike proteins controls protease-triggered cell entry.

Enya Qing, Pengfei Li, Laura Cooper, Sebastian Schulz, Hans-Martin Jäck, Lijun Rong, Stanley Perlman, Tom Gallagher

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 57 citations in OpenAlex.

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  11. The accomplices: Heparan sulfates and N-glycans foster SARS-CoV-2 spike:ACE2 receptor binding and virus priming.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  17. Adaptation of SARS-CoV-2 to ACE2Journal of virology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Enya QingDepartment of Microbiology and Immunology, Loyola University Chicago, Maywood, IL 60153, USA.
Pengfei LiDepartment of Microbiology and Immunology, University of Iowa, Iowa City, IA 52242, USA.
Laura CooperDepartment of Microbiology and Immunology, University of Illinois Chicago, Chicago, IL 60607, USA.
Sebastian SchulzDivision of Molecular Immunology, Friedrich-Alexander University Erlangen-Nuremberg and University Hospital Erlangen, 91054 Erlangen, Germany.
Hans-Martin JäckDivision of Molecular Immunology, Friedrich-Alexander University Erlangen-Nuremberg and University Hospital Erlangen, 91054 Erlangen, Germany.
Lijun RongDepartment of Microbiology and Immunology, University of Illinois Chicago, Chicago, IL 60607, USA.
Stanley PerlmanDepartment of Microbiology and Immunology, University of Iowa, Iowa City, IA 52242, USA.
Tom GallagherDepartment of Microbiology and Immunology, Loyola University Chicago, Maywood, IL 60153, USA. Electronic address: tgallag@luc.edu.
Friedrich-Alexander-Universität Erlangen-Nürnberg · DELoyola University Chicago · USUniversity of Illinois Chicago · USUniversity of Iowa · US

Funding

SARS-CoV Proteins in Heterologous Viral InfectionP01AI060699 · NIAID · UNIVERSITY OF IOWA · PI PERLMAN, STANLEY · 2004 to 2021
$21.5M
NIAID NIH HHS P01 AI060699
6 · The paper itself

Abstract

SARS-CoV-2 continues to evolve into variants of concern (VOC), with greatest variability in the multidomain, entry-facilitating spike proteins. To recognize the significance of adaptive spike protein changes, we compare variant SARS-CoV-2 virus particles in several assays reflecting authentic virus-cell entry. Virus particles with adaptive changes in spike amino-terminal domains (NTDs) are hypersensitive to proteolytic activation of membrane fusion, an essential step in virus-cell entry. Proteolysis is within fusion domains (FDs), at sites over 10 nm from the VOC-specific NTD changes, indicating allosteric inter-domain control of fusion activation. In addition, NTD-specific antibodies block FD cleavage, membrane fusion, and virus-cell entry, suggesting restriction of inter-domain communication as a neutralization mechanism. Finally, using structure-guided mutagenesis, we identify an inter-monomer β sheet structure that facilitates NTD-to-FD transmissions and subsequent fusion activation. This NTD-to-FD axis that sensitizes viruses to infection and to NTD-specific antibody neutralization provides new context for understanding selective forces driving SARS-CoV-2 evolution.

Indexed as

COVID-19Spike Glycoprotein, CoronavirusCommunicationHumansPeptide HydrolasesSARS-CoV-2Virus InternalizationPeptide HydrolasesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2coronavirusCP: Microbiologymembrane fusionSARS-CoV-2spike proteinvirus entryvirus evolutionvirus neutralizationvirus variation

Identifiers

PMID35477024
PMCPMC9015963
OpenAlexW4224292227

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.