Evidence map›Paper›PMID 35476822›Full record

ArticleJMIR medical informatics2022

Construction of a Linked Data Set of COVID-19 Knowledge Graphs: Development and Applications.

Haofen Wang, Huifang Du, Guilin Qi, Huajun Chen, Wei Hu, Zhuo Chen

Abstract read
In one paragraph

Article in JMIR medical informatics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Haofen WangCollege of Design and Innovation, Tongji University, Shanghai, China.ORCID https://orcid.org/0000-0003-3018-3824
Huifang DuCollege of Design and Innovation, Tongji University, Shanghai, China.ORCID https://orcid.org/0000-0001-9152-8027
Guilin QiSchool of Computer Science and Engineering, Southeast University, Nanjing, China.ORCID https://orcid.org/0000-0002-1957-6961
Huajun ChenCollege of Computer Science and Technology, Zhejiang University, Hangzhou, China.ORCID https://orcid.org/0000-0001-5496-7442
Wei HuNational Institute of Healthcare Data Science, Nanjing University, Nanjing, China.ORCID https://orcid.org/0000-0003-3635-6335
Zhuo ChenCollege of Computer Science and Technology, Zhejiang University, Hangzhou, China.ORCID https://orcid.org/0000-0001-9991-6892

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWith the continuous spread of COVID-19, information about the worldwide pandemic is exploding. Therefore, it is necessary and significant to organize such a large amount of information. As the key branch of artificial intelligence, a knowledge graph (KG) is helpful to structure, reason, and understand data.

objectiveTo improve the utilization value of the information and effectively aid researchers to combat COVID-19, we have constructed and successively released a unified linked data set named OpenKG-COVID19, which is one of the largest existing KGs related to COVID-19. OpenKG-COVID19 includes 10 interlinked COVID-19 subgraphs covering the topics of encyclopedia, concept, medical, research, event, health, epidemiology, goods, prevention, and character.

methodsIn this paper, we introduce the key techniques exploited in building COVID-19 KGs in a top-down manner. First, the schema of the modeling process for each KG in OpenKG-COVID19 is described. Second, we propose different methods for extracting knowledge from open government sites, professional texts, public domain-specific sources, and public encyclopedia sites. The curated 10 COVID-19 KGs are further linked together at both the schema and data levels. In addition, we present the naming convention for OpenKG-COVID19.

resultsOpenKG-COVID19 has more than 2572 concepts, 329,600 entities, 513 properties, and 2,687,329 facts, and the data set will be updated continuously. Each COVID-19 KG was evaluated, and the average precision was found to be above 93%. We have developed search and browse interfaces and a SPARQL endpoint to improve user access. Possible intelligent applications based on OpenKG-COVID19 for further development are also described.

conclusionsA KG is useful for intelligent question-answering, semantic searches, recommendation systems, visualization analysis, and decision-making support. Research related to COVID-19, biomedicine, and many other communities can benefit from OpenKG-COVID19. Furthermore, the 10 KGs will be continuously updated to ensure that the public will have access to sufficient and up-to-date knowledge.

Indexed as

artificial intelligenceCOVID-19data setknowledge extractionknowledge fusionknowledge graphlinked datanatural language processingschema modelingsemantic search

Identifiers

PMID35476822
PMCPMC9109781

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.