Evidence map›Paper›PMID 35476802›Full record

ArticlePloS one2022

Novel assays to investigate the mechanisms of latent infection with HIV-2.

Michael D Lu, Sushama Telwatte, Nitasha Kumar, Fernanda Ferreira, Holly Anne Martin, Gayatri Nikhila Kadiyala, Adam Wedrychowski, Sara Moron-Lopez, Tsui-Hua Chen, Erin A Goecker and 5 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 55% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Current view on HIV-2 - epidemiology, diagnosis and treatment.Central European journal of public health · 2025
    Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Michael D LuDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, CA, United States of America.ORCID 0000-0001-7999-1924
Sushama TelwatteDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, CA, United States of America.
Nitasha KumarDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, CA, United States of America.
Fernanda FerreiraBrigham and Women's Hospital, Harvard Medical School, Boston, MA, United States of America.
Holly Anne MartinDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, CA, United States of America.
Gayatri Nikhila KadiyalaDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, CA, United States of America.
Adam WedrychowskiDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, CA, United States of America.
Sara Moron-LopezDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, CA, United States of America.ORCID 0000-0003-0800-9205
Tsui-Hua ChenDepartment of Medicine, San Francisco VA Health Care System, San Francisco, CA, United States of America.
Erin A GoeckerDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, United States of America.
Robert W CoombsDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, United States of America.
Chuanyi M LuDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, CA, United States of America.ORCID 0000-0002-5906-2543
Joseph K WongDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, CA, United States of America.
Athe TsibrisBrigham and Women's Hospital, Harvard Medical School, Boston, MA, United States of America.
Steven A YuklDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, CA, United States of America.ORCID 0000-0002-4578-9872
University of California, San Francisco · USBrigham and Women's Hospital · USUniversity of Washington · USSan Francisco VA Health Care System · US

Funding

University of Washington/Fred Hutch Center for AIDS ResearchP30AI027757 · NIAID · UNIVERSITY OF WASHINGTON · PI EDWIN ROBERTO ORELLANA · 1988 to 2026
$104.9M
The heterogeneous HIV expressing reservoir: dynamics, persistence mechanisms, tissue distribution, and contribution to reboundP01AI169606 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Steven A Yukl · 2022 to 2026
$9.3M
HIV-2 latency and its reversalR01AI155131 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI TSIBRIS, ATHE M. · 2021 to 2025
$4.6M
Novel single genome approaches to determine the mechanisms of HIV latent infection in blood, gut, and lymph nodesR01DK120387 · NIDDK · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI LICHTERFELD, MATHIAS, YUKL, STEVEN A · 2019 to 2023
$4.1M
Investigating Mechanisms of HIV Persistence in the GutR01DK108349 · NIDDK · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI YUKL, STEVEN A · 2015 to 2019
$2.2M
Understanding HIV latency reversal and clearance of infected cells in vivoR01AI132128 · NIAID · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI WONG, JOSEPH K, YUKL, STEVEN A · 2017 to 2021
$1.9M
Quantification of HIV Reservoirs in the Gut-Associated Lymphatic SystemIK2CX000520 · VA · VETERANS AFFAIRS MED CTR SAN FRANCISCO · PI YUKL, STEVEN A · 2011 to 2015
–
CSRD VA IK2 CX000520NIAID NIH HHS P01 AI169606NIAID NIH HHS P30 AI027757NIAID NIH HHS R01 AI132128NIAID NIH HHS R01 AI155131NIDDK NIH HHS R01 DK108349NIDDK NIH HHS R01 DK120387
6 · The paper itself

Abstract

Although there have been great advancements in the field of HIV treatment and prevention, there is no cure. There are two types of HIV: HIV-1 and HIV-2. In addition to genetic differences between the two types of HIV, HIV-2 infection causes a slower disease progression, and the rate of new HIV-2 infections has dramatically decreased since 2003. Like HIV-1, HIV-2 is capable of establishing latent infection in CD4+ T cells, thereby allowing the virus to evade viral cytopathic effects and detection by the immune system. The mechanisms underlying HIV latency are not fully understood, rendering this a significant barrier to development of a cure. Using RT-ddPCR, we previously demonstrated that latent infection with HIV-1 may be due to blocks to HIV transcriptional elongation, distal transcription/polyadenylation, and multiple splicing. In this study, we describe the development of seven highly-specific RT-ddPCR assays for HIV-2 that can be applied to the study of HIV-2 infections and latency. We designed and validated seven assays targeting different HIV-2 RNA regions along the genome that can be used to measure the degree of progression through different blocks to HIV-2 transcription and splicing. Given that HIV-2 is vastly understudied relative to HIV-1 and that it can be considered a model of a less virulent infection, application of these assays to studies of HIV-2 latency may inform new therapies for HIV-2, HIV-1, and other retroviruses.

Indexed as

HIV-1HIV InfectionsHIV SeropositivityLatent InfectionHIV-2HumansVirus Latency

Identifiers

PMID35476802
PMCPMC9045618
OpenAlexW4226265530

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.