Evidence map›Paper›PMID 35476781›Full record

ArticleJournal of clinical laboratory analysis2022

Construction of an algorithm based on oncosis-related LncRNAs comprising the molecular subtypes and a risk assessment model in lung adenocarcinoma.

Hang Chen, Chongchang Zhou, Zeyang Hu, Menglu Sang, Saiqi Ni, Jiacheng Wu, Qiaoling Pan, Jingtao Tong, Kaitai Liu, Ni Li and 2 more

Open access · goldAbstract read
In one paragraph

Article in Journal of clinical laboratory analysis, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Hang ChenDepartment of Cardiothoracic Surgery, The Affiliated Lihuili Hospital, Ningbo University, Ningbo, China.ORCID https://orcid.org/0000-0002-6356-3930
Chongchang ZhouDepartment of Cardiothoracic Surgery, The Affiliated Lihuili Hospital, Ningbo University, Ningbo, China.ORCID https://orcid.org/0000-0002-8728-6819
Zeyang HuDepartment of Cardiothoracic Surgery, The Affiliated Lihuili Hospital, Ningbo University, Ningbo, China.
Menglu SangDepartment of Cardiothoracic Surgery, The Affiliated Lihuili Hospital, Ningbo University, Ningbo, China.
Saiqi NiDepartment of Urology, Ningbo City First Hospital, Ningbo, China.
Jiacheng WuDepartment of Cardiothoracic Surgery, The Affiliated Lihuili Hospital, Ningbo University, Ningbo, China.
Qiaoling PanDepartment of Cardiothoracic Surgery, The Affiliated Lihuili Hospital, Ningbo University, Ningbo, China.
Jingtao TongDepartment of Radiation Oncology, The Affiliated Lihuili Hospital, Ningbo University, Ningbo, China.
Kaitai LiuDepartment of Radiation Oncology, The Affiliated Lihuili Hospital, Ningbo University, Ningbo, China.ORCID https://orcid.org/0000-0003-1757-5591
Ni LiDepartment of Cardiothoracic Surgery, The Affiliated Lihuili Hospital, Ningbo University, Ningbo, China.
Linwen ZhuDepartment of Cardiothoracic Surgery, The Affiliated Lihuili Hospital, Ningbo University, Ningbo, China.
Guodong XuDepartment of Cardiothoracic Surgery, The Affiliated Lihuili Hospital, Ningbo University, Ningbo, China.ORCID https://orcid.org/0000-0001-8684-6485
Ningbo University · CNNingbo First Hospital · CN

Funding

Basic public welfare project of Ningbo 2019C50041The Natural Science Foundation of Ningbo 2019A610226The Natural Science Foundation of Ningbo 2021J278The Natural Science Foundation of Zhejiang LY22H160004
6 · The paper itself

Abstract

backgroundAs an important non-apoptotic cell death method, oncosis has been reported to be closely associated with tumors in recent years. However, few research reported the relationship between oncosis and lung cancer.

methodsIn this study, we established an oncosis-based algorithm comprised of cluster grouping and a risk assessment model to predict the survival outcomes and related tumor immunity of patients with lung adenocarcinomas (LUAD). We selected 11 oncosis-related lncRNAs associated with the prognosis (CARD8-AS1, LINC00941, LINC01137, LINC01116, AC010980.2, LINC00324, AL365203.2, AL606489.1, AC004687.1, HLA-DQB1-AS1, and AL590226.1) to divide the LUAD patients into different clusters and different risk groups. Compared with patients in clsuter1, patients in cluster2 had a survival advantage and had a relatively more active tumor immunity. Subsequently, we constructed a risk assessment model to distinguish between patients into different risk groups, in which low-risk patients tend to have a better prognosis. GO enrichment analysis revealed that the risk assessment model was closely related to immune activities. In addition, low-risk patients tended to have a higher content of immune cells and stromal cells in tumor microenvironment, higher expression of PD-1, CTLA-4, HAVCR2, and were more sensitive to immune checkpoint inhibitors (ICIs), including PD-1/CTLA-4 inhibitors. The risk score had a significantly positive correlation with tumor mutation burden (TMB). The survival curve of the novel oncosis-based algorithm suggested that low-risk patients in cluster2 have the most obvious survival advantage.

conclusionThe novel oncosis-based algorithm investigated the prognosis and the related tumor immunity of patients with LUAD, which could provide theoretical support for customized individual treatment for LUAD patients.

Indexed as

AdenocarcinomaLung NeoplasmsRNA, Long NoncodingAlgorithmsCARD Signaling Adaptor ProteinsHumansLungNeoplasm ProteinsPrognosisProgrammed Cell Death 1 ReceptorRisk AssessmentTumor MicroenvironmentCARD8 protein, humanCARD Signaling Adaptor ProteinsNeoplasm ProteinsProgrammed Cell Death 1 ReceptorRNA, Long Noncodingcluster analysislung adenocarcinomaoncosis-related lncRNAsprognostic signaturetumor immunity

Identifiers

PMID35476781
PMCPMC9169186
OpenAlexW4226133843

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.