Evidence map›Paper›PMID 35476513›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Genomewide CRISPR knockout screen identified PLAC8 as an essential factor for SADS-CoVs infection.

Longping V Tse, Rita M Meganck, Kenza C Araba, Boyd L Yount, Kendall M Shaffer, Yixuan J Hou, Jennifer E Munt, Lily E Adams, Jason A Wykoff, Jeremy M Morowitz and 6 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Molecular breeding of pigs in the genome editing era.Genetics, selection, evolution : GSE · 2025
    Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Research Advances on Swine Acute Diarrhea Syndrome Coronavirus.Animals : an open access journal from MDPI · 2024
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

Longping V TseDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27514.ORCID 0000-0001-7582-8396
Rita M MeganckDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27514.ORCID 0000-0003-2799-3754
Kenza C ArabaMarsico Lung Institute, University of North Carolina at Chapel Hill, Chapel Hill, NC 27514.
Boyd L YountDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27514.
Kendall M ShafferMarsico Lung Institute, University of North Carolina at Chapel Hill, Chapel Hill, NC 27514.ORCID 0000-0002-1052-2975
Yixuan J HouDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27514.ORCID 0000-0002-8323-7243
Jennifer E MuntDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27514.
Lily E AdamsDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27514.
Jason A WykoffMarsico Lung Institute, University of North Carolina at Chapel Hill, Chapel Hill, NC 27514.
Jeremy M MorowitzCenter for Gastrointestinal Biology and Disease, University of North Carolina at Chapel Hill, Chapel Hill, NC 27514.
Stephanie DongDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27514.
Scott T MagnessCenter for Gastrointestinal Biology and Disease, University of North Carolina at Chapel Hill, Chapel Hill, NC 27514.
William F MarzluffIntegrated Program for Biological and Genome Sciences, Department of Biochemistry & Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27514.ORCID 0000-0003-3635-4073
Liara M GonzalezDepartment of Clinical Sciences, College of Veterinary Medicine, North Carolina State University, Raleigh, NC 27606.
Camille EhreMarsico Lung Institute, University of North Carolina at Chapel Hill, Chapel Hill, NC 27514.
Ralph S BaricDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27514.ORCID 0000-0001-6827-8701
University of North Carolina at Chapel Hill · USNorth Carolina State University · US

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
UNC-CH CENTER FOR ENVIRONMENTAL HEALTH &SUSCEPTIBILITYP30ES010126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Hazel B Nichols · 2001 to 2026
$36.3M
Vector CoreP30DK065988 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Scott H Randell · 2004 to 2026
$26.5M
Stanford/UNC Biomimetic U19 Research CenterU19AI116484 · NIAID · STANFORD UNIVERSITY · PI KUO, CALVIN J · 2015 to 2025
$13.5M
Mechanisms of MERS-CoV Entry, Cross-species Transmission and PathogenesisR01AI110700 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BARIC, RALPH S, LI, FANG · 2015 to 2024
$7.4M
Understanding Risk of Zoonotic Virus Emergence in EID Hotspots of Southeast AsiaU01AI151797 · NIAID · ECOHEALTH ALLIANCE, INC. · PI DASZAK, PETER · 2020 to 2023
$6.0M
DEVELOPMENT OF HUMAN INTESTINAL SIMULACRAR01DK109559 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ALLBRITTON, NANCY L., BULTMAN, SCOTT J · 2015 to 2019
$5.2M
Receptor recognition mechanisms of coronavirusesR01AI089728 · NIAID · UNIVERSITY OF MINNESOTA · PI Fang Li, Timothy Patrick Sheahan · 2010 to 2026
$4.7M
Intestinal stem cell responses to ischemic injury in a large animal modelK01OD019911 · OD · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI GONZALEZ, LIARA M · 2015 to 2019
$608k
NCI NIH HHS P30 CA016086NIAID NIH HHS R01 AI089728NIAID NIH HHS R01 AI110700NIAID NIH HHS U01 AI151797NIAID NIH HHS U19 AI116484NIDDK NIH HHS P30 DK065988NIDDK NIH HHS R01 DK109559NIEHS NIH HHS P30 ES010126NIH HHS K01 OD019911
6 · The paper itself

Abstract

Zoonotic transmission of coronaviruses poses an ongoing threat to human populations. Endemic outbreaks of swine acute diarrhea syndrome coronavirus (SADS-CoV) have caused severe economic losses in the pig industry and have the potential to cause human outbreaks. Currently, there are no vaccines or specific antivirals against SADS-CoV, and our limited understanding of SADS-CoV host entry factors could hinder prompt responses to a potential human outbreak. Using a genomewide CRISPR knockout screen, we identified placenta-associated 8 protein (PLAC8) as an essential host factor for SADS-CoV infection. Knockout of PLAC8 abolished SADS-CoV infection, which was restored by complementing PLAC8 from multiple species, including human, rhesus macaques, mouse, pig, pangolin, and bat, suggesting a conserved infection pathway and susceptibility of SADS-CoV among mammals. Mechanistically, PLAC8 knockout does not affect viral entry; rather, knockout cells displayed a delay and reduction in viral subgenomic RNA expression. In a swine primary intestinal epithelial culture (IEC) infection model, differentiated cultures have high levels of PLAC8 expression and support SADS-CoV replication. In contrast, expanding IECs have low levels of PLAC8 expression and are resistant to SADS-CoV infection. PLAC8 expression patterns translate in vivo; the immunohistochemistry of swine ileal tissue revealed high levels of PLAC8 protein in neonatal compared to adult tissue, mirroring the known SADS-CoV pathogenesis in neonatal piglets. Overall, PLAC8 is an essential factor for SADS-CoV infection and may serve as a promising target for antiviral development for potential pandemic SADS-CoV.

Indexed as

AlphacoronavirusCoronavirus InfectionsSwine DiseasesAnimalsClustered Regularly Interspaced Short Palindromic RepeatsSwinecoronavirusCRISPRPLAC8swine acute diarrhea syndrome coronavirus

Identifiers

PMID35476513
PMCPMC9170153
OpenAlexW4225107700

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.