Evidence map›Paper›PMID 35471909›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Yin Yeng Lee, Sibel Cal-Kayitmazbatir, Lauren J Francey, Michael Seifu Bahiru, Katharina E Hayer, Gang Wu, Molly J Zeller, Robyn Roberts, James Speers, Justin Koshalek and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Circadian Responses to Light in the BTBR Mouse.Journal of biological rhythms · 2022
    Article
  5. The duper mutation reveals previously unsuspected functions ofProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Anatomical Methods to Study the Suprachiasmatic Nucleus.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Yin Yeng LeeDivisions of Human Genetics and Immunobiology, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229.ORCID 0000-0002-8092-3926
Sibel Cal-KayitmazbatirDivisions of Human Genetics and Immunobiology, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229.ORCID 0000-0001-9357-1344
Lauren J FranceyDivisions of Human Genetics and Immunobiology, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229.
Michael Seifu BahiruDepartment of Biology, University of Massachusetts Amherst, Amherst, MA 01003.
Katharina E HayerInstitute for Translational Medicine and Therapeutics, University of Pennsylvania, Philadelphia, PA 19104.
Gang WuDivisions of Human Genetics and Immunobiology, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229.
Molly J ZellerUniversity of Wisconsin Biotechnology Center, University of Wisconsin-Madison, Madison, WI 53706.ORCID 0000-0002-2121-875X
Robyn RobertsUniversity of Wisconsin Biotechnology Center, University of Wisconsin-Madison, Madison, WI 53706.ORCID 0000-0002-5700-354X
James SpeersUniversity of Wisconsin Biotechnology Center, University of Wisconsin-Madison, Madison, WI 53706.ORCID 0000-0002-7821-2420
Justin KoshalekUniversity of Wisconsin Biotechnology Center, University of Wisconsin-Madison, Madison, WI 53706.
Mark E BerresUniversity of Wisconsin Biotechnology Center, University of Wisconsin-Madison, Madison, WI 53706.ORCID 0000-0001-6282-0117
Eric L BittmanDepartment of Biology, University of Massachusetts Amherst, Amherst, MA 01003.ORCID 0000-0001-6968-7590
John B HogeneschDivisions of Human Genetics and Immunobiology, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229.ORCID 0000-0002-9138-8973
Cincinnati Children's Hospital Medical Center · USUniversity of Wisconsin–Madison · USUniversity of Massachusetts Amherst · USTranslational Therapeutics (United States) · US

Funding

Circadian Rhythms and Internal DesynchronizationR01HL138551 · NHLBI · UNIVERSITY OF MASSACHUSETTS AMHERST · PI BITTMAN, ERIC L, HOGENESCH, JOHN B · 2018 to 2021
$2.4M
NHLBI NIH HHS R01 HL138551
6 · The paper itself

Abstract

The duper mutation is a recessive mutation that shortens the period length of the circadian rhythm in Syrian hamsters. These animals show a large phase shift when responding to light pulses. Limited genetic resources for the Syrian hamster (Mesocricetus auratus) presented a major obstacle to cloning duper. This caused the duper mutation to remain unknown for over a decade. In this study, we did a de novo genome assembly of Syrian hamsters with long-read sequencing data from two different platforms, Pacific Biosciences and Oxford Nanopore Technologies. Using two distinct ecotypes and a fast homozygosity mapping strategy, we identified duper as an early nonsense allele of Cryptochrome 1 (Cry1) leading to a short, unstable protein. CRY1 is known as a highly conserved component of the repressive limb of the core circadian clock. The genome assembly and other genomic datasets generated in this study will facilitate the use of the Syrian hamster in biomedical research.

Indexed as

COVID-19CryptochromesAnimalsCircadian RhythmCricetinaeHumansLoss of Function MutationMesocricetusMutationTranscription FactorsCryptochromesTranscription FactorsCry1-nullfast homozygosity mappingsshort circadian period lengthSyrian hamster genome

Identifiers

PMID35471909
PMCPMC9170138
OpenAlexW4225003385

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.