Evidence map›Paper›PMID 35471564›Full record

ArticleAnnals of neurology2022

Biallelic Variants in the Ectonucleotidase ENTPD1 Cause a Complex Neurodevelopmental Disorder with Intellectual Disability, Distinct White Matter Abnormalities, and Spastic Paraplegia.

Daniel G Calame, Isabella Herman, Reza Maroofian, Aren E Marshall, Karina Carvalho Donis, Jawid M Fatih, Tadahiro Mitani, Haowei Du, Christopher M Grochowski, Sergio B Sousa and 55 more

Open access · bronzeAbstract read
In one paragraph

Article in Annals of neurology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
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  6. Functional genomics and small molecules in mitochondrial neurodevelopmental disorders.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2024
    Review
  7. Movement disorders in hereditary spastic paraplegias.Arquivos de neuro-psiquiatria · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

65 authors at 20 institutions in 17 countries.

Daniel G Calame *Section of Pediatric Neurology and Developmental Neuroscience, Department of Pediatrics, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0001-6860-372X
Isabella Herman *Section of Pediatric Neurology and Developmental Neuroscience, Department of Pediatrics, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0002-7359-6832
Reza MaroofianDepartment of Neuromuscular Disorders, Queen Square Institute of Neurology, University College London, London, UK.
Aren E MarshallChildren's Hospital of Eastern Ontario Research Institute, University of Ottawa, Ottawa, Ontario, Canada.
Karina Carvalho DonisGraduate Program in Genetics and Molecular Biology, Federal University of Rio Grande do Sul, Porto Alegre, Brazil.
Jawid M FatihDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Tadahiro MitaniDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Haowei DuDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Christopher M GrochowskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0002-3884-7720
Sergio B SousaUniversity Clinic of Genetics, Faculty of Medicine, Universidade de Coimbra, Coimbra, Portugal.
Charul GijavanekarDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Somayeh BakhtiariPediatric Movement Disorders Program, Division of Pediatric Neurology, Barrow Neurological Institute, Phoenix Children's Hospital, Phoenix, AZ, USA.
Yoko A ItoChildren's Hospital of Eastern Ontario Research Institute, University of Ottawa, Ottawa, Ontario, Canada.
Clarissa RoccaDepartment of Neuromuscular Disorders, Queen Square Institute of Neurology, University College London, London, UK.
Jill V HunterTexas Children's Hospital, Houston, TX, USA.
V Reid SuttonDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0002-6450-8554
Lisa T EmrickSection of Pediatric Neurology and Developmental Neuroscience, Department of Pediatrics, Baylor College of Medicine, Houston, TX, USA.
Kym M BoycottChildren's Hospital of Eastern Ontario Research Institute, University of Ottawa, Ottawa, Ontario, Canada.
Alexander LossosDepartment of Neurology, Hadassah Medical Organization and Faculty of Medicine, Hebrew University, Jerusalem, Israel.
Yakov FelligDepartment of Pathology, Hadassah Medical Organization and Faculty of Medicine, Hebrew University, Jerusalem, Israel.
Eugenia PrusHematology and Bone Marrow Transplantation Division, Hadassah Medical Center and Hebrew University, Jerusalem, Israel.
Yosef KalishHematology and Bone Marrow Transplantation Division, Hadassah Medical Center and Hebrew University, Jerusalem, Israel.
Vardiella MeinerDepartment of Genetics, Hadassah Medical Center and Hebrew University, Jerusalem, Israel.
Manon SuerinkDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, the Netherlands.
Claudia RuivenkampDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, the Netherlands.
Kayla MuirheadDivision of Neurology, Children's Hospital of Philadelphia, Abramson Research Center, Philadelphia, PA, USA.
Nebal W SaadiCollege of Medicine/University of Baghdad, Unit of Pediatric Neurology, Children Welfare Teaching Hospital, Baghdad, Iraq.
Maha S ZakiClinical Genetics Department, Human Genetics and Genome Research Institute, Center of Excellence of Human Genetics, National Research Centre, Cairo, Dokki, Egypt.
Arjan BoumanDepartment of Clinical Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.
Tahsin Stefan BarakatDepartment of Clinical Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.ORCID 0000-0003-1231-1562
David L SkidmoreDepartment of Pediatrics, Dalhousie University, Halifax, Nova Scotia, Canada.
Matthew OsmondChildren's Hospital of Eastern Ontario Research Institute, University of Ottawa, Ottawa, Ontario, Canada.ORCID 0000-0002-5886-873X
Thiago Oliveira SilvaMedical Genetics Service, Porto Alegre Clinical Hospital, Porto Alegre, Brazil.
David MurphyDepartment of Clinical and Movement Neurosciences, UCL Queen Square Institute of Neurology, University College London, London, UK.
Ehsan Ghayoor KarimianiGenetics Section, Molecular and Clinical Sciences Institute, St George's University of London, London, UK.
Yalda JamshidiGenetics Section, Molecular and Clinical Sciences Institute, St George's University of London, London, UK.
Asaad Ghanim JaddoaPediatric Neurology, Children Welfare Teaching Hospital, Baghdad, Iraq.
Homa TajsharghiSchool of Health Sciences, Division Biomedicine, University of Skövde, Skövde, Sweden.ORCID 0000-0001-8854-5213
Sheng Chih JinDepartment of Genetics, Washington University School of Medicine, St Louis, MO, USA.
Mohammad Reza AbbaszadeganMedical Genetics Research Center, Medical School, Mashhad University of Medical Sciences, Mashhad, Iran.
Reza Ebrahimzadeh-VesalPardis Pathobiology and Genetics Laboratory, Mashhad, Iran.
Susan HosseiniPardis Pathobiology and Genetics Laboratory, Mashhad, Iran.
Shahryar AlaviDepartment of Cell and Molecular Biology & Microbiology, Faculty of Biological Science and Technology, University of Isfahan, Isfahan, Iran.ORCID 0000-0002-3484-3423
Amir BahreiniDepartment of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA, USA.ORCID 0000-0002-2410-6833
Elahe ZareanDepartment of Perinatology, Isfahan University of Medical Sciences, Isfahan, Iran.
Mohammad Mehdi SalehiDepartment of Pediatrics, Isfahan University of Medical Sciences, Isfahan, Iran.
Nouriya Abbas Al-SannaaPediatric Services, John Hopkins Aramco Health Care, Dhahran, Saudi Arabia.
Giovanni ZifarelliCentogene GmbH, Rostock, Germany.
Peter BauerCentogene GmbH, Rostock, Germany.
Simon C RobsonCenter for Inflammation Research, Transplantation, Departments of Medicine and Anesthesia, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.
Zeynep Coban-AkdemirDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Lorena TravagliniUnit of Neuromuscular and Neurodegenerative Disorders, Department of Neurosciences, Bambino Gesù Children's Hospital, Scientific Institute for Research and Health Care, Rome, Italy.
Francesco NicitaUnit of Neuromuscular and Neurodegenerative Disorders, Department of Neurosciences, Bambino Gesù Children's Hospital, Scientific Institute for Research and Health Care, Rome, Italy.
Shalini N JhangianiHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Richard A GibbsHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Jennifer E PoseyDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0003-4814-6765
Michael C KruerPediatric Movement Disorders Program, Division of Pediatric Neurology, Barrow Neurological Institute, Phoenix Children's Hospital, Phoenix, AZ, USA.
Kristin D KernohanChildren's Hospital of Eastern Ontario Research Institute, University of Ottawa, Ottawa, Ontario, Canada.
Jonas A Morales SauteMedical Genetics Service, Porto Alegre Clinical Hospital, Porto Alegre, Brazil.
Henry HouldenDepartment of Neuromuscular Disorders, Queen Square Institute of Neurology, University College London, London, UK.
Adeline VanderverDivision of Neurology, Children's Hospital of Philadelphia, Abramson Research Center, Philadelphia, PA, USA.
Sarah H ElseaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0002-1400-8519
Davut PehlivanSection of Pediatric Neurology and Developmental Neuroscience, Department of Pediatrics, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0001-5788-0270
Dana MarafiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0003-2233-3423
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0001-9907-9246
Baylor College of Medicine · USHadassah Medical Center · ILUniversity of Ottawa · CANational Hospital for Neurology and Neurosurgery · GBMashhad University of Medical Sciences · IRUniversidade Federal do Rio Grande do Sul · BRBambino Gesù Children's Hospital · ITBarrow Neurological Institute · USCentogene (Germany) · DEChildren's Hospital of Philadelphia · USErasmus MC · NLIsfahan University of Medical Sciences · IRLeiden University Medical Center · NLSt George's, University of London · GBBaghdad Medical City · IQBeth Israel Deaconess Medical Center · USDalhousie University · CAHospitais da Universidade de Coimbra · PTIsfahan University of Technology · IRNational Human Genome Research Institute · US

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
Frequency of variants of unknown significance by ancestry groups in the All of Us Research Program cohortU01HG011758 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI RICHARD A GIBBS, JAMES R. LUPSKI · 2021 to 2026
$13.8M
MEDICAL GENETICS RESEARCH FELLOWSHIP PROGRAMT32GM007526 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI Brendan Lee · 1985 to 2026
$11.4M
STRUCTURAL VARIATION IN NEUROLOGICAL DISEASER35NS105078 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 2018 to 2025
$6.0M
Mutidisciplinary Training;Brain Disorders &DevelopmentT32NS043124 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI SWANN, JOHN WILLIAM · 2002 to 2021
$4.6M
Genomic Insights into the Neurobiology of Cerebral PalsyR01NS106298 · NINDS · UNIVERSITY OF ARIZONA · PI KRUER, MICHAEL C · 2019 to 2023
$3.7M
Immunomodulatory effects of bilirubin are mediated through aryl hydrocarbon receptor, O2 and purinergic pathwaysR01DK108894 · NIDDK · BETH ISRAEL DEACONESS MEDICAL CENTER · PI LONGHI, MARIA SERENA · 2017 to 2021
$2.0M
Individual genomic analyses to discover the molecular basis and mechanisms contributing to adult-onset diseaseK08HG008986 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI POSEY, JENNIFER ELLEN · 2017 to 2021
$831k
Engineering Inhibitory Antibodies to Ectoenzymes for Cancer TreatmentR21CA164970 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI ROBSON, SIMON C. · 2012 to 2013
$405k
Medical Research Council MR/S01165X/1NHGRI NIH HHS K08 HG008986NHGRI NIH HHS U01 HG011758NHGRI NIH HHS U54 HG003273NHGRI NIH HHS U54HG003273NHGRI NIH HHS UM1 HG006542NIGMS NIH HHS T32 GM007526NIH HHS NIH T32 GM007526-42NIH HHS R01DK108894NIH HHS R21CA164970NIH HHS T32 NS043124-19NINDS NIH HHS R01 NS106298NINDS NIH HHS R01NS106298NINDS NIH HHS R35 NS105078NINDS NIH HHS R35NS105078NINDS NIH HHS T32 NS043124
6 · The paper itself

Abstract

objectiveHuman genomics established that pathogenic variation in diverse genes can underlie a single disorder. For example, hereditary spastic paraplegia is associated with >80 genes, with frequently only few affected individuals described for each gene. Herein, we characterize a large cohort of individuals with biallelic variation in ENTPD1, a gene previously linked to spastic paraplegia 64 (Mendelian Inheritance in Man # 615683).

methodsIndividuals with biallelic ENTPD1 variants were recruited worldwide. Deep phenotyping and molecular characterization were performed.

resultsA total of 27 individuals from 17 unrelated families were studied; additional phenotypic information was collected from published cases. Twelve novel pathogenic ENTPD1 variants are described (NM 001776.6): c.398_399delinsAA; p.(Gly133Glu), c.540del; p.(Thr181Leufs*18), c.640del; p.(Gly216Glufs*75), c.185 T > G; p.(Leu62*), c.1531 T > C; p.(*511Glnext*100), c.967C > T; p.(Gln323*), c.414-2_414-1del, and c.146 A > G; p.(Tyr49Cys) including 4 recurrent variants c.1109 T > A; p.(Leu370*), c.574-6_574-3del, c.770_771del; p.(Gly257Glufs*18), and c.1041del; p.(Ile348Phefs*19). Shared disease traits include childhood onset, progressive spastic paraplegia, intellectual disability (ID), dysarthria, and white matter abnormalities. In vitro assays demonstrate that ENTPD1 expression and function are impaired and that c.574-6_574-3del causes exon skipping. Global metabolomics demonstrate ENTPD1 deficiency leads to impaired nucleotide, lipid, and energy metabolism.

interpretationThe ENTPD1 locus trait consists of childhood disease onset, ID, progressive spastic paraparesis, dysarthria, dysmorphisms, and white matter abnormalities, with some individuals showing neurocognitive regression. Investigation of an allelic series of ENTPD1 (1) expands previously described features of ENTPD1-related neurological disease, (2) highlights the importance of genotype-driven deep phenotyping, (3) documents the need for global collaborative efforts to characterize rare autosomal recessive disease traits, and (4) provides insights into disease trait neurobiology. ANN NEUROL 2022;92:304-321.

Indexed as

ApyraseIntellectual DisabilitySpastic Paraplegia, HereditaryWhite MatterDysarthriaHumansMutationParaplegiaPedigreePhenotypeApyraseENTPD1 protein, human

Identifiers

PMID35471564
PMCPMC10054521
OpenAlexW4224945122

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.