Evidence map›Paper›PMID 35468926›Full record

ArticleScientific reports2022

Characterization of host factors associated with the internal ribosomal entry sites of foot-and-mouth disease and classical swine fever viruses.

Yutaro Ide, Bouchra Kitab, Nobumasa Ito, Riai Okamoto, Yui Tamura, Takafumi Matsui, Yoshihiro Sakoda, Kyoko Tsukiyama-Kohara

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Yutaro IdeTransboundary Animal Disease Center, Joint Faculty of Veterinary Medicine, Kagoshima University, Kagoshima, Japan.
Bouchra KitabTransboundary Animal Disease Center, Joint Faculty of Veterinary Medicine, Kagoshima University, Kagoshima, Japan.
Nobumasa ItoTransboundary Animal Disease Center, Joint Faculty of Veterinary Medicine, Kagoshima University, Kagoshima, Japan.
Riai OkamotoTransboundary Animal Disease Center, Joint Faculty of Veterinary Medicine, Kagoshima University, Kagoshima, Japan.
Yui TamuraTransboundary Animal Disease Center, Joint Faculty of Veterinary Medicine, Kagoshima University, Kagoshima, Japan.
Takafumi MatsuiTransboundary Animal Disease Center, Joint Faculty of Veterinary Medicine, Kagoshima University, Kagoshima, Japan.
Yoshihiro SakodaDepartment of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, Hokkaido, 060-0818, Japan.
Kyoko Tsukiyama-KoharaTransboundary Animal Disease Center, Joint Faculty of Veterinary Medicine, Kagoshima University, Kagoshima, Japan. kkohara@vet.kagoshima-u.ac.jp.
Kagoshima University · JPHokkaido University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Foot-and-mouth disease virus (FMDV) and classical swine fever virus (CSFV) possess positive-sense single-stranded RNA genomes and an internal ribosomal entry site (IRES) element within their 5'-untranslated regions. To investigate the common host factors associated with these IRESs, we established cell lines expressing a bicistronic luciferase reporter plasmid containing an FMDV-IRES or CSFV-IRES element between the Renilla and firefly luciferase genes. First, we treated FMDV-IRES cells with the French maritime pine extract, Pycnogenol (PYC), and examined its suppressive effect on FMDV-IRES activity, as PYC has been reported to have antiviral properties. Next, we performed microarray analysis to identify the host factors that modified their expression upon treatment with PYC, and confirmed their function using specific siRNAs. We found that polycystic kidney disease 1-like 3 (PKD1L3) and ubiquitin-specific peptidase 31 (USP31) were associated with FMDV-IRES activity. Moreover, silencing of these factors significantly suppressed CSFV-IRES activity. Thus, PKD1L3 and USP31 are host factors associated with the functions of FMDV- and CSFV-IRES elements.

Indexed as

Classical Swine FeverClassical Swine Fever VirusFoot-and-Mouth DiseaseFoot-and-Mouth Disease VirusAnimalsInternal Ribosome Entry SitesSwineInternal Ribosome Entry Sites

Identifiers

PMID35468926
PMCPMC9039067
OpenAlexW4224443245

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.