Evidence map›Paper›PMID 35467525›Full record

ArticleeLife2022

Zebrafish airinemes optimize their shape between ballistic and diffusive search.

Sohyeon Park, Hyunjoong Kim, Yi Wang, Dae Seok Eom, Jun Allard

Abstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Optimal switching strategies for navigation in stochastic settings.Journal of the Royal Society, Interface · 2025
    Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sohyeon Park *Center for Complex Biological Systems, University of California, Irvine, Irvine, United States.
Hyunjoong Kim *Center for Mathematical Biology, Department of Mathematics, University of Pennsylvania, Philadelphia, United States.ORCID 0000-0002-3534-2102
Yi WangDepartment of Developmental & Cell Biology, University of California, Irvine, Irvine, United States.ORCID 0000-0001-7409-4335
Dae Seok EomCenter for Complex Biological Systems, University of California, Irvine, Irvine, United States.ORCID 0000-0002-0617-8788
Jun AllardCenter for Complex Biological Systems, University of California, Irvine, Irvine, United States.ORCID 0000-0002-2758-4515

Funding

Signaling at a distance mediated by vesicles on novel cellular protrusionsR35GM142791 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI EOM, DAE SEOK · 2021 to 2025
$1.9M
NIGMS NIH HHS R35 GM142791
6 · The paper itself

Abstract

In addition to diffusive signals, cells in tissue also communicate via long, thin cellular protrusions, such as airinemes in zebrafish. Before establishing communication, cellular protrusions must find their target cell. Here, we demonstrate that the shapes of airinemes in zebrafish are consistent with a finite persistent random walk model. The probability of contacting the target cell is maximized for a balance between ballistic search (straight) and diffusive search (highly curved, random). We find that the curvature of airinemes in zebrafish, extracted from live-cell microscopy, is approximately the same value as the optimum in the simple persistent random walk model. We also explore the ability of the target cell to infer direction of the airineme's source, finding that there is a theoretical trade-off between search optimality and directional information. This provides a framework to characterize the shape, and performance objectives, of non-canonical cellular protrusions in general.

Indexed as

Cell Surface ExtensionsZebrafishAnimalsDiffusioncell biologycellular projectionpattern formationphysics of living systemsstochastic searchzebrafish

Identifiers

PMID35467525
PMCPMC9098217

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.