Evidence map›Paper›PMID 35467406›Full record

ArticleMicrobiology spectrum2022

Consistency of Mycobacterium tuberculosis Complex Spoligotyping between the Membrane-Based Method and

Charlotte Genestet, Elisabeth Hodille, Albin Bernard, Maxime Vallée, Gérard Lina, Adrien Le Meur, Guislaine Refrégier, Oana Dumitrescua, Lyon TB study group

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Charlotte Genestet *Centre International de Recherche en Infectiologie (CIRI), Ecole Normale Supérieure de Lyon, Université Claude Bernard Lyon-1, Inserm, Lyon, France.
Elisabeth Hodille *Centre International de Recherche en Infectiologie (CIRI), Ecole Normale Supérieure de Lyon, Université Claude Bernard Lyon-1, Inserm, Lyon, France.ORCID 0000-0002-5144-1987
Albin BernardCentre International de Recherche en Infectiologie (CIRI), Ecole Normale Supérieure de Lyon, Université Claude Bernard Lyon-1, Inserm, Lyon, France.
Maxime ValléeHospices Civils de Lyongrid.413852.9, Institut des Agents Infectieux, Laboratoire de Bactériologie, Lyon, France.
Gérard LinaCentre International de Recherche en Infectiologie (CIRI), Ecole Normale Supérieure de Lyon, Université Claude Bernard Lyon-1, Inserm, Lyon, France.ORCID 0000-0002-9236-7998
Adrien Le MeurCentre national de la recherche scientifique (CNRS), AgroParisTech, Ecologie Systématique et Evolution, Université Paris-Saclay, Gif-sur-Yvette, France.
Guislaine RefrégierCentre national de la recherche scientifique (CNRS), AgroParisTech, Ecologie Systématique et Evolution, Université Paris-Saclay, Gif-sur-Yvette, France.
Oana DumitrescuaCentre International de Recherche en Infectiologie (CIRI), Ecole Normale Supérieure de Lyon, Université Claude Bernard Lyon-1, Inserm, Lyon, France.
Lyon TB study group
Université Claude Bernard Lyon 1 · FRCentre National de la Recherche Scientifique · FRHospices Civils de Lyon · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To tackle the spread of tuberculosis (TB), epidemiological studies are undertaken worldwide to investigate TB transmission chains. Clustered regulatory interspaced short palindromic repeats (CRISPR) locus diversity, also called spoligotyping, is a widely used genotyping assay for the characterization of Mycobacterium tuberculosis complex (MTBC). We compared herein the spoligotyping of MTBC clinical isolates using a membrane-based method (following an initial PCR step) and whole-genome sequencing (WGS)-based method (i.e.,

Indexed as

Mycobacterium tuberculosisTuberculosisBacterial Typing TechniquesGenotypeHumansPolymerase Chain ReactionRepetitive Sequences, Nucleic AcidWhole Genome SequencingCRISPR-builder-TBin silico spoligotypingmembrane-based spoligotypingMycobacterium tuberculosis complexspoligotypingtuberculosiswhole-genome sequencing

Identifiers

PMID35467406
PMCPMC9241810
OpenAlexW4224737749

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.