Evidence map›Paper›PMID 35467387›Full record

ArticleMicrobiology spectrum2022

Two-Dimensional Cell Separation: a High-Throughput Approach to Enhance the Culturability of Bacterial Cells from Environmental Samples.

Krishna K Yadav, Yogesh Nimonkar, Bhagyashri J Poddar, Lochana Kovale, Isita Sagar, Yogesh Shouche, Hemant J Purohit, Anshuman A Khardenavis, Stefan J Green, Om Prakash

Abstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Research progress in isolation and identification of rumen probiotics.Frontiers in cellular and infection microbiology · 2024
    Review
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Krishna K Yadav *National Centre for Microbial Resource, National Centre for Cell Sciencegrid.419235.8, Pune, Maharashtra, India.
Yogesh Nimonkar *National Centre for Microbial Resource, National Centre for Cell Sciencegrid.419235.8, Pune, Maharashtra, India.
Bhagyashri J Poddar *Environmental Biotechnology and Genomics Division, CSIR-National Environmental Engineering Research Institute, Nagpur, Maharashtra, India.
Lochana KovaleNational Centre for Microbial Resource, National Centre for Cell Sciencegrid.419235.8, Pune, Maharashtra, India.
Isita SagarNational Centre for Microbial Resource, National Centre for Cell Sciencegrid.419235.8, Pune, Maharashtra, India.
Yogesh ShoucheNational Centre for Microbial Resource, National Centre for Cell Sciencegrid.419235.8, Pune, Maharashtra, India.
Hemant J PurohitEnvironmental Biotechnology and Genomics Division, CSIR-National Environmental Engineering Research Institute, Nagpur, Maharashtra, India.
Anshuman A KhardenavisEnvironmental Biotechnology and Genomics Division, CSIR-National Environmental Engineering Research Institute, Nagpur, Maharashtra, India.
Stefan J GreenGenomics and Microbiome Core Facility, Rush University Medical Center, Chicago, Illinois, USA.
Om PrakashNational Centre for Microbial Resource, National Centre for Cell Sciencegrid.419235.8, Pune, Maharashtra, India.ORCID 0000-0002-6568-0567

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Culture-independent sequence data from various environmental samples have revealed an immense microbial diversity of environmental, clinical, and industrial importance that has not yet been cultured. Cultivation is imperative to validate findings emerging from cultivation-independent molecular data and exploit the isolated organisms for biotechnological purposes. Efforts have been made to boost the cultivability of microbes from environmental samples by use of a range of techniques and instrumentation. The manuscript presents a novel yet simple and innovative approach to improving the cultivability of natural microorganisms without sophisticated instrumentation. By employing gradient centrifugation combined with serial dilution ("two-dimensional cell separation"), significantly higher numbers of genera (>2-fold higher) and species (>3-fold higher) were isolated from environmental samples, including soil, anaerobic sludge, and landfill leachate, than from using serial dilution alone. This simple and robust protocol can be modified for any environment and culture medium and provides access to untapped microbial diversity.

Indexed as

BacteriaSewageCell SeparationCulture MediaCulture MediaSewagebacteriacultivabilityculturomicsenvironmental samplesnot yet cultured

Identifiers

PMID35467387
PMCPMC9248899

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.